Job Description P30958 Confidence 95.37% Date Thu Jan 5 11:46:49 GMT 2012 Rank 232 Aligned Residues 107 % Identity 14% Template c1sxjA_ PDB info PDB header:replication Chain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		605	.	.	.	.	610	.	.	.	.	.	.	.	.																		.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	K	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.										.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.										.	.	.	.	.	.	.	.	.	.
Template Sequence		N	K	G	S	V	M	K	L	K	N	W	L	A	N	W	E	N	S	K	K	N	S	F	K	H	A	G	K	D	G	S	G	V	F	R	A	A	M	L	Y	G	P	P	G	I	G	K	T	T	A	A	H	L	V	A	Q	E	L	.	.	.	G	Y	D	I	L	E	Q	N	A	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T							T	T	T					T	T	S	T	T	S		S							S	T	T	S	S												T	.	.	.	T								T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370				.	.	.	.	.	.	.	.	.
		668	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	K	E	R	I	K	A	M
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	V	R	S	K	T	L	L	N	A	G	V	K	N	A	L	D	N	M	S	V	.	.	.	.	.	V	G	Y	F	K	H	Q	N	L	N	G	K	H	F	V	I	I	M	D	E	V	D	G	M	S	G	G	D	R	G	G	V	G	Q	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S										T	G	G	G	G	T	T				S	.	.	.	.	.	T	T	T	T	T				S	S	T	T	S							S	G	G	G			T	T	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template SS confidence
																		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.						.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions