Job Description P30958 Confidence 100.00% Date Thu Jan 5 11:46:49 GMT 2012 Rank 38 Aligned Residues 334 % Identity 23% Template c1s2mA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:putative atp-dependent rna helicase dhh1; PDBTitle: crystal structure of the dead box protein dhh1p Resolution 2.10 Å

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		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.				.	650	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																																		.	.	.
Query SS confidence																			.																																																		.	.	.
Query Sequence		F	K	H	D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	.	E	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	.	.	.	H	K	Q	V	A	V	L	V	P	T
Query Conservation																			.																																																		.	.	.
Alig confidence															.				.																	.	.	.	.	.	.																												.	.	.
Template Conservation															.																					.	.	.	.	.	.
Template Sequence		F	Y	L	K	R	E	L	L	M	G	I	F	E	.	A	G	F	E	K	P	S	P	I	Q	E	E	A	I	P	V	A	I	T	G	.	.	.	.	.	.	R	D	I	L	A	R	A	K	N	G	T	G	K	T	A	A	F	V	I	P	T	L	E	K	V	K	P	K	L	N	K	I	Q	A	L	I	M	V	P	T
Template Known Secondary structure		G													.	T	T			S															T	.	.	.	.	.	.									T	T	S																T	T	S		S								S	S
Template Predicted Secondary structure															.																					.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.							.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.						.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.
Query Sequence		T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	.	.	.	.	.	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R
Query Conservation																																																										.	.	.	.	.
Alig confidence																																										.	.	.	.													.	.	.	.	.
Template Conservation																																										.	.	.	.
Template Sequence		R	E	L	A	L	Q	T	S	Q	V	V	R	T	L	G	K	H	C	G	I	S	C	M	V	T	T	G	G	T	N	L	R	D	D	I	L	R	L	N	E	.	.	.	.	T	V	H	I	L	V	G	T	P	G	R	V	L	D	L	A	S	R	K	V	A	D	L	S	D	C	S	L	F	I	M	D	E	A	D	K
Template Known Secondary structure																T	T	T	T	T								S	S	S									T	T	S	.	.	.	.			S															T	T		S			T	T								S
Template Predicted Secondary structure																																										.	.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
							734	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.				790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																																									.	.	.
Query SS confidence		.	.	.	.	.																																																									.	.	.
Query Sequence		.	.	.	.	.	F	G	V	R	H	K	E	R	I	K	A	M	R	A	N	V	D	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A	T	P	P	A	R	R	L	A	V	K	T	F	.	.	.	V	R	E	Y	D	S	M	V	V	R	E	A	I	L	R	E
Query Conservation		.	.	.	.	.																																																									.	.	.
Alig confidence		.	.	.	.	.																																																									.	.	.
Template Conservation
Template Sequence		M	L	S	R	D	F	K	T	I	I	E	Q	I	L	S	F	L	P	P	T	H	Q	S	L	L	F	S	A	T	F	P	L	T	V	K	E	F	M	V	K	H	L	H	K	P	Y	E	I	N	L	M	E	E	L	T	L	K	G	I	T	Q	Y	Y	A	F	V	E	E	R	Q	K	L	H	C	L	N	T	L	F	S
Template Known Secondary structure			S	S												T	T	S		S	S								S															S	S					S			S	S		B		T	T										G	G	G
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		806	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	R	G	G	Q	V	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	V	P	E	A	R	I	A	I	G	H	G	Q	M	R	E	R	E	L	E	R	V	M	N	D	F	H	H	Q	R	F	N	V	L	V	C	T	T	I	I	E	T	G	I	D	I	P	T	A	N	T	I	I	I
Query Conservation
Alig confidence																													.	.
Template Conservation																													.	.
Template Sequence		K	L	Q	I	N	Q	A	I	I	F	C	N	S	T	N	R	V	E	L	L	A	K	K	I	T	D	L	.	.	G	Y	S	C	Y	Y	S	H	A	R	M	K	Q	Q	E	R	N	K	V	F	H	E	F	R	Q	G	K	V	R	T	L	V	C	S	D	L	L	T	R	G	I	D	I	Q	A	V	N	V	V	I	N
Template Known Secondary structure			S			S							S	S															.	.	T								T	T	S														T	T	S	S	S					S	S		S	S	S	S				T	T
Template Predicted Secondary structure																													.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		886	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	A	D	H	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	S	H	H	Q	A	Y	A	W	L	L	T	P	H	P	K	A	M	T	T	D	A	Q	K	R	L	E	A	I	A	S	L
Query Conservation
Alig confidence							.																															.	.	.	.	.	.
Template Conservation							.																															.	.	.	.	.	.
Template Sequence		F	D	F	P	K	.	T	A	E	T	Y	L	H	R	I	G	R	S	G	R	F	G	H	L	G	L	A	I	N	L	I	N	W	N	D	R	.	.	.	.	.	.	F	N	L	Y	K	I	E	Q	E
Template Known Secondary structure		S	S			S	.	S										B	S	S		T	T											G	G	G		.	.	.	.	.	.
Template Predicted Secondary structure							.																															.	.	.	.	.	.
Template SS confidence
		358	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.							.	.	.	.	.	.	.	400	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions