Job Description P30958 Confidence 72.02% Date Thu Jan 5 11:46:49 GMT 2012 Rank 490 Aligned Residues 145 % Identity 13% Template c1j8yF_ PDB info PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant Resolution 2.00 Å

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		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.														.	.	.	620	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	K	V	R	D	V	A	A	E	L	L	D	I	Y	A	Q	R	A	A	K	E	G	F	A	F	K	H	D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	.	.	.	.	.	.	.	.	.	.	.	.	.	C	Q	P	L	A	M	D	R
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	K	A	V	E	D	F	I	K	E	L	Q	K	S	L	I	S	A	D	V	N	V	K	L	V	F	S	L	T	N	K	I	K	E	R	L	K	N	E	K	P	P	T	Y	I	E	R	R	E	W	F	I	K	I	V	Y	D	E	L	S	N	L	F	G	G	D	K	E	P	K	V	I	P	D	K	I	P	Y	V	I
Template Known Secondary structure																			T	T																								T	T																			T	T		S						S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.			.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	K	Q	V	A	V	L	V	P	.	.	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G
Query Conservation																																			.	.
Alig confidence									.	.	.					.																			.	.																				.	.
Template Conservation									.	.	.					.																																								.	.
Template Sequence		M	L	V	G	V	Q	G	.	.	.	T	T	A	G	.	K	L	A	Y	F	Y	K	K	K	G	F	K	V	G	L	V	G	A	D	V	Y	R	P	A	A	L	E	Q	L	Q	Q	L	G	Q	Q	I	G	V	P	.	.	V	Y	G	E	P	G	E	K	D	V	V	G	I	A	K	R	G	V	E	K	F	L	S	E
Template Known Secondary structure						S			.	.	.					.									T	T											S	S															T			.	.					T	T																		T
Template Predicted Secondary structure									.	.	.					.																																								.	.
Template SS confidence
		102	.	.	.	.	.	.				.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		703	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	D	I	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	M	E	I	I	I
Template Known Secondary structure		T		S
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions