Phyre 2 alignment of P30958 with c1a1vA

Job Description P30958
Confidence 100.00% Date Thu Jan 5 11:46:49 GMT 2012

Rank 51 Aligned Residues 275

% Identity 16% Template c1a1vA_

PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	K	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I
Query Conservation
Alig confidence																						.	.	.																												.	.	.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.																												.	.	.									.	.	.	.	.	.	.	.	.	.	.
Template Sequence	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	A	Q	.	.	.	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	V	.	.	.	D	P	N	I	R	T	G	V	.	.	.	.	.	.	.	.	.	.	.	R	T	I	T	T	G	S
Template Known Secondary structure						T	T	S		T	T	T								T	T	.	.	.	T								S																	S		.	.	.							S	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.																												.	.	.									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.												.	.	.	260	.	.	.

	705	.	.	.	.	710	.		.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.							.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.
Predicted Secondary structure								.																											.	.	.	.	.	.
Query SS confidence								.																											.	.	.	.	.	.
Query Sequence	D	I	L	I	G	T	H	.	K	L	L	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	.	.	.	.	.	.	H	K	E	R	I	K	A	M	R	A	N	V	D	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A
Query Conservation								.																											.	.	.	.	.	.
Alig confidence								.																											.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	P	I	T	Y	S	T	Y	G	K	F	L	A	D	G	G	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	A	T	S	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V
Template Known Secondary structure	S												T	T							S						T	T	T			S														T	T	T	T	T		S							S	S		T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.																.

	778	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	P	P	A	R	R	L	A	V	K	T	F	V	R	E	Y	D	S	M	V	V	R	E	A	I	L	R	E	I	L	R	G	G	Q	V	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	V	P	E	A	R	I	A	I	G	H	G	Q	M	R	E	R	E	L	E	R	V	M	N	D	F
Query Conservation
Alig confidence																																																								.	.
Template Conservation																																																								.	.
Template Sequence	T	V	P	H	P	N	I	E	E	V	A	L	S	T	T	G	E	I	P	F	Y	G	K	A	I	P	L	E	V	I	K	G	G	R	H	L	I	F	C	H	S	K	K	K	C	D	E	L	A	A	K	L	V	A	L	.	.	G	I	N	A	V	A	Y	Y	R	G	L	D	V	S	V	I	P	T	S	G	D	V	V
Template Known Secondary structure					T	T								S		S	S				T	T					T					S	S							S	S														T	.	.	T								T	T	S		G	G	G	S		S	S	S	S
Template Predicted Secondary structure																																																								.	.
Template SS confidence
	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.			.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.

								858	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.			.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.																			.	.
Query SS confidence	.	.	.	.	.	.	.																			.	.
Query Sequence	.	.	.	.	.	.	.	H	H	Q	R	F	N	V	L	V	C	T	T	I	I	E	T	G	I	.	.	D	I	P	T	A	N	T	I	I	I	E	R	A	D	H	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	S	H	H	Q	A	Y	A	W	L	L	T	P	H	P	K	A	M	T	T	D	A	Q	K
Query Conservation	.	.	.	.	.	.	.																			.	.
Alig confidence	.	.	.	.	.	.	.																			.	.																.															.
Template Conservation																																											.															.
Template Sequence	V	V	A	T	D	A	L	F	T	G	D	F	D	S	V	I	D	C	N	T	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	L	P	Q	.	D	A	V	S	R	T	Q	R	R	G	R	T	G	R	.	G	K	P	G	I	Y	R	F	V	A	P	G	E	R	P	S	G	M	F	D	S	S
Template Known Secondary structure					T	T						B	S																	S	S	S											.	B									T	T	B		S	.	S	S							S		S			B		S		B
Template Predicted Secondary structure																																											.															.
Template SS confidence
	408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.		450	.	.	.	.	.	.	.	.	.	460	.	.	.		.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.

	929	930	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	L	E	A	I	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	L	C	E	C	Y	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	490	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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