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Job DescriptionP0AFC0
Confidence97.88%DateThu Jan 5 11:25:51 GMT 2012
Rank83Aligned Residues122
% Identity14%Templatec3p5tE_
PDB info PDB header:rna binding proteinChain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  YKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFS
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Template Sequence  MRRTVEGVLIVHEHRLPHVLLLQLG. . TTFFKLPGGELNPGEDEVEGLKRLMTEILGVLQDWVIDDCIGNWWRPNFEPPQ
Template Known Secondary structure  STTT..TT
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   76...80.........90.........100 .........110.........120.........130.........140.........150...
 
   86...90.........100.........110.........120.........
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Query Sequence  HLRHRYAPGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAA
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Template Sequence  YPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFEL
Template Known Secondary structure  BSS

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   158.160.........170.........180.........190.........200.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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