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Job Description | P0AFC0 | Confidence | 97.88% | Date | Thu Jan 5 11:25:51 GMT 2012 |
Rank | 83 | Aligned Residues | 122 |
% Identity | 14% | Template | c3p5tE_ |
PDB info |
PDB header:rna binding protein | Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; |
PDBTitle: cfim25-cfim68 complex
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Resolution | 2.70 Å |
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6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
Y | K | R | P | V | S | I | L | V | V | I | Y | A | Q | D | T | K | R | V | L | M | L | Q | R | R | D | D | P | D | F | W | Q | S | V | T | G | S | V | E | E | G | E | T | A | P | Q | A | A | M | R | E | V | K | E | E | V | T | I | D | V | V | A | E | Q | L | T | L | I | D | C | Q | R | T | V | E | F | E | I | F | S |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
M | R | R | T | V | E | G | V | L | I | V | H | E | H | R | L | P | H | V | L | L | L | Q | L | G | . |
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T | T | F | F | K | L | P | G | G | E | L | N | P | G | E | D | E | V | E | G | L | K | R | L | M | T | E | I | L | G | V | L | Q | D | W | V | I | D | D | C | I | G | N | W | W | R | P | N | F | E | P | P | Q |
Template Known Secondary structure |   |
S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  | T | . | . | T | T |  |  |  |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
76 | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | |
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. | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . |
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86 | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
H | L | R | H | R | Y | A | P | G | V | T | R | N | T | E | S | W | F | C | L | A | L | P | H | E | R | Q | I | V | F | T | E | H | L | A | Y | K | W | L | D | A | P | A | A |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
Y | P | Y | I | P | A | H | I | T | K | P | K | E | H | K | K | L | F | L | V | Q | L | Q | E | K | A | L | F | A | V | P | K | N | Y | K | L | V | A | A | P | L | F | E | L |
Template Known Secondary structure |   |
B | S | S |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
158 | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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