 |
Job Description | P0AFC0 | Confidence | 99.69% | Date | Thu Jan 5 11:25:51 GMT 2012 |
Rank | 71 | Aligned Residues | 123 |
% Identity | 15% | Template | c1rrqA_ |
PDB info |
PDB header:hydrolase/dna | Chain: A: PDB Molecule:muty; |
PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
|
Resolution | 2.22 Å |
|
 |
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | |
|
|
. | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
| . | . | . |
|  |  |  |
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | V | Y | K | R | P | V | S | I | L | V | V | I | Y | A | Q | D | T | K | R | V | L | M | L | Q | R | R | D | D | P | . |
. |
. |
D | F | W | Q | S | V | T | G | S | V | E | E | G | E | T | A | P | Q | A | A | M | R | E | V | K | E | E | V | T | I | D | V | V | A | E | Q | L | T | L | I | D | C | Q | R | T | V | E |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |   |   | . | . | . |   |   |
|   |   |
|
|
|   |
|
|   |
|
|
|   |   |   |
|
|   |
|
|
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
Template Conservation |   |
  |
|
|   |
|
|   |   |   |   |   |   |
|
|
|   |   |   |
|   |
|
|
|   |
|
|   |   |   |
|   |   |
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|
|   | . | . | . | . | . |
|
|   |   |
|
|   |
|
|   |
|   |   |   |   |   |
|   |   |   |   |
|   | . | . | . |
Template Sequence |   |
V | K | M | V | K | Q | V | P | L | A | V | A | V | L | A | D | D | E | G | R | V | L | I | R | K | R | D | S | T | G | L | L | A | N | L | W | E | F | P | S | C | E | T | D | G | A | D | G | K | . |
. |
. |
. |
. |
E | K | L | E | Q | M | V | G | L | Q | V | E | L | T | E | P | I | V | S | F | E | H | A | . |
. |
. |
Template Known Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | S | S | S |  |  |  |  |  |  |
|
| S | S | S | T | T | T | T |
|  |  |
|
|  |  |  |
| T | T | T |
|
|  | . | . | . | . | . |  |  |  |  |  | T | T |
|
|  |  |  |  |
| S |
|
|  |  |  |  |  |  | . | . | . |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  | . | . | . | . | . |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
227 | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | |
|
|
|
|
. | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | |
|
|
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | E | I | F | S | H | L | R | H | R | Y | A | P | G | V | T | R | N | T | E | S | W | F | C | L | A | L | P | H | E | R | Q | I | V | F | T | E | H | L | A | Y | K | W | L | D | A | P | A | A | A | A | L | T | K | S | W | S | N | R | Q | A | I | E | Q | F | V | I | N | A | A |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . |
|
|
|   |   |   |   |
|   |
|
|   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |
|   |   |
|
|   |   |   |
|
|   |   |
|   |
|
|   |   |   |
|
|
|
|   |   |   |
|
|   |   |
|
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
F | S | H | L | V | W | Q | L | T | V | F | P | G | R | L | V | H | G | G | P | . |
. |
. |
. |
V | E | E | P | Y | R | L | A | P | E | D | E | L | K | A | Y | A | F | P | V | S | H | Q | R | V | W | R | E | Y | K | E | W | A | S |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| S |
| . | . | . | . |
|
| T | T |  |  |  |  |  | G | G | G | G | G | G | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
307 | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | |
|
|
|
. | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|