Job Description P0A6V1 Confidence 99.85% Date Thu Jan 5 11:03:59 GMT 2012 Rank 40 Aligned Residues 227 % Identity 18% Template c3tqdA_ PDB info PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		S	V	A	L	I	L	A	G	G	R	G	T	R	L	K	D	L	T	N	K	R	A	.	K	P	A	V	H	F	G	G	K	F	R	I	I	D	F	A	L	S	N	C	I	N	S	G	I	R	R	M	G	V	I	T	Q	Y	Q	S	H	T	L	V	Q	H	I	Q	R	G	W	S	F	F	N	E	E	M	N	E	F
Query Conservation																								.
Alig confidence									.	.	.	.	.				.	.	.	.	.			.										.																									.	.													.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.				.	.	.	.	.													.																									.	.													.	.	.	.	.	.	.	.	.
Template Sequence		F	R	V	I	I	P	A	.	.	.	.	.	R	F	D	.	.	.	.	.	L	P	G	K	A	L	V	D	I	A	G	K	.	P	X	I	Q	H	V	Y	E	S	A	I	K	S	G	A	E	E	V	V	I	A	T	D	D	.	.	K	R	I	R	Q	V	A	E	D	F	G	A	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									.	.	.	.	.				.	.	.	.	.		T	T	G	G	G				T	T		.													T	T		S							S		.	.										T	T		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.				.	.	.	.	.													.																									.	.													.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.						10	.	.						.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		V	D	L	L	P	A	Q	Q	R	M	K	G	E	N	W	Y	R	G	T	A	D	A	V	T	Q	N	L	D	I	I	R	R	Y	K	A	E	Y	V	V	I	L	A	G	D	H	.	.	I	Y	K	Q	D	Y	S	R	M	L	I	D	H	V	E	K	G	A	R	C	T	V	A	C	M	P	V	P	I	E	E	A	S
Query Conservation																																															.	.
Alig confidence		.	.	.	.	.	.																								.																.	.
Template Conservation		.	.	.	.	.	.																								.
Template Sequence		.	.	.	.	.	.	V	V	C	X	T	S	S	D	H	Q	S	G	T	E	R	I	A	E	A	A	V	A	L	.	G	F	E	D	D	E	I	I	V	C	L	Q	G	D	E	P	L	I	P	P	D	A	I	R	K	L	A	E	D	L	D	E	H	D	K	V	A	S	L	C	T	P	I	T	E	V	D	E	L	F
Template Known Secondary structure		.	.	.	.	.	.							T	T			S												T	.	T			T	T								T	T																																				T
Template Predicted Secondary structure		.	.	.	.	.	.																								.
Template SS confidence
								64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		177	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.								.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure					.	.																		.	.	.	.	.	.	.
Query SS confidence					.	.																		.	.	.	.	.	.	.
Query Sequence		A	F	G	.	.	V	M	A	V	D	E	N	D	K	I	I	E	F	V	E	K	P	.	.	.	.	.	.	.	A	N	P	P	S	M	P	N	D	P	S	K	S	L	A	S	M	G	I	Y	V	F	D	A	D	Y	L	Y	E	L	L	E	E	D	D	R	D	E	N	S	S	H	D	F	G	K	D	L	I	P	K
Query Conservation					.	.																		.	.	.	.	.	.	.
Alig confidence					.	.																		.	.	.	.	.	.	.																																													.	.
Template Conservation																																																																											.	.
Template Sequence		N	P	H	S	T	K	V	V	L	N	R	R	N	Y	A	L	Y	F	S	H	A	P	I	P	W	G	R	D	T	F	S	D	K	E	N	L	Q	L	N	G	S	H	Y	R	H	V	G	I	Y	A	Y	R	V	G	F	L	E	E	Y	L	S	W	D	A	C	P	A	E	K	X	E	A	L	.	.	E	Q	L	R	I
Template Known Secondary structure			T	T	S							T	T	S	B						S	S		S	S			T	T	T	T	T		G	G	G				S	S																						S										T		.	.	T	T
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	E	A	G	L	A	Y	A	H	P	F	P	L	S	C	V	Q	S	D	P	D	A	E	P	Y	W	R	D	V	G	T	L	E	A	Y	W	K	A	N
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.
Template Sequence		L	W	H	G	G	R	I	H	X	V	V	A	K	.	.	.	.	.	.	.	.	.	.	S	K	C	P	P	G	V	D	T	E	E	D	L	E	R	V	R
Template Known Secondary structure				T	T									S	.	.	.	.	.	.	.	.	.	.	S							S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.											230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions