Job Description P0A6V1 Confidence 99.80% Date Thu Jan 5 11:03:59 GMT 2012 Rank 44 Aligned Residues 225 % Identity 17% Template c3f1cB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative 2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from listeria monocytogenes Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																																			.									.
Query SS confidence																																																			.									.
Query Sequence		P	L	K	S	V	A	L	I	L	A	G	G	R	G	T	R	L	K	D	L	T	N	K	R	A	K	P	A	V	H	F	G	G	K	F	R	I	I	D	F	A	L	S	N	C	I	N	S	G	.	I	R	R	M	G	V	I	T	.	Q	Y	Q	S	H	T	L	V	Q	H	I	Q	R	G	W	S	F	F	N	E	E
Query Conservation																																																			.									.
Alig confidence						.													.	.	.	.	.	.	.											.															.									.														.	.	.	.	.	.	.	.
Template Conservation						.													.	.	.	.	.	.	.											.																																						.	.	.	.	.	.	.	.
Template Sequence		S	L	I	Y	.	A	Q	I	L	A	G	M	G	N	V	S	M	.	.	.	.	.	.	.	P	K	Q	F	L	P	L	N	G	K	.	P	I	I	V	H	T	V	E	K	F	I	L	N	T	R	F	D	K	I	L	I	S	S	P	K	E	W	M	N	H	A	E	D	N	I	K	K	.	.	.	.	.	.	.	.
Template Known Secondary structure						.								T	T	T	S		.	.	.	.	.	.	.		G	G	G	S			T	T		.												T		T	T		S								G	G	G											.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.													.	.	.	.	.	.	.											.																																						.	.	.	.	.	.	.	.
Template SS confidence
		0	.	.	.		.	.	.	.	.	.	10	.	.	.	.	.								.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		M	N	E	F	V	D	L	L	P	A	Q	Q	R	M	K	G	E	N	W	Y	R	G	T	A	D	A	V	T	Q	N	L	D	I	I	R	R	Y	K	A	E	Y	V	V	I	L	A	G	D	.	.	H	I	Y	K	Q	D	Y	S	R	M	L	I	D	H	V	E	K	G	A	R	C	T	V	A	C	M	P	V	P	I
Query Conservation																																																		.	.
Alig confidence		.	.	.																																														.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	Y	I	S	D	D	R	I	V	V	I	E	G	G	E	D	R	N	E	T	I	M	N	G	I	R	F	V	E	K	T	Y	G	L	T	D	D	D	I	I	V	T	H	D	A	V	R	P	F	L	T	H	R	I	I	E	E	N	I	D	A	A	L	E	T	G	A	V	D	T	V	I	E	A	L	D	T	I
Template Known Secondary structure		.	.	.					T	T								S	S																T				T	T								T	T		T	T																T	S									S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	A	S	A	F	G	V	M	A	V	D	E	N	D	K	I	I	E	F	V	E	K	P	A	N	P	P	S	M	P	N	D	P	S	K	S	L	A	S	M	G	I	Y	V	F	D	A	D	Y	L	Y	E	L	L	E	E	D	D	R	D	E	N	S	S	H	D	F	G	K	D	L	I	P	K	I	T	E	A	G
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		V	E	S	S	N	H	E	V	I	T	D	I	P	V	R	D	H	M	Y	Q	G	Q	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	F	N	M	K	K	V	F	N	H	Y	Q	N	.	.	.	L	T	P	E	K	K	Q	I	L	T	D	A	C	K	I	C	L	L	A	G
Template Known Secondary structure			B		S	S	S	S	S			B				G	G	G								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	.	.	.	S																			T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.																				.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		253		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		L	.	A	Y	A	H	P	F	P	L	S	C	V	Q	S	D	P	D	A	E	P	Y	W	R	D	V	G	T	L	E	A	Y	W	K	A	N	L	D	L	A	S	V	V
Query Conservation			.
Alig confidence			.							.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	D	V	K	L	V	K	G	.	.	.	.	.	.	.	.	.	.	.	E	I	F	N	I	K	I	T	T	P	Y	D	L	K	V	A	N	A	I	I	Q	E	R	I
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.		T	T						S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210												.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions