Job Description P0A6V1 Confidence 99.88% Date Thu Jan 5 11:03:59 GMT 2012 Rank 34 Aligned Residues 217 % Identity 21% Template c2xwlB_ PDB info PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: crystal structure of ispd from mycobacterium smegmatis in complex2 with ctp and mg Resolution 1.49 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		S	V	A	L	I	L	A	G	G	R	G	T	R	L	K	D	L	T	N	K	R	A	K	P	A	V	H	F	G	G	K	F	R	I	I	D	F	A	L	S	N	C	I	N	S	G	I	R	R	M	G	V	I	T	.	.	Q	Y	Q	S	H	T	L	V	Q	H	I	Q	R	G	W	S	F	F	N	E	E	M	N	E
Query Conservation																																																								.	.
Alig confidence																	.	.	.														.																							.	.																.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.														.																																								.	.	.	.	.	.	.	.	.
Template Sequence		T	V	A	V	V	P	A	A	G	S	G	E	R	L	R	.	.	.	A	G	R	P	K	A	F	V	T	L	G	G	T	.	P	L	L	E	H	A	L	S	G	L	R	A	S	G	V	I	D	R	I	V	I	A	V	P	P	A	L	T	D	E	S	K	L	V	F	G	G	E	D	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	T	T	T	.	.	.	S	S	S		G	G	G	S			T	T		.													T	S											G	G	G										B	T	T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.														.																																								.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.				.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		F	V	D	L	L	P	A	Q	Q	R	M	K	G	E	N	W	Y	R	G	T	A	D	A	V	T	Q	N	L	D	I	I	R	R	Y	K	A	E	Y	V	V	I	L	A	G	D	H	.	.	I	Y	K	Q	D	Y	S	R	M	L	I	D	H	V	E	K	G	A	R	C	T	V	A	C	M	P	V	P	I	E	E	A
Query Conservation																																																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																								.	.												.	.																														.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																								.	.																																											.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	S	V	I	V	S	G	G	V	D	R	T	E	S	V	A	L	A	L	E	A	A	G	D	.	.	A	E	F	V	L	V	H	D	A	A	R	A	L	T	P	P	A	L	I	A	R	V	V	A	A	L	K	E	G	H	S	A	V	V	P	G	L	A	P	A	D	T	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.								S	S										T	T	S		S	.	.		S							T	T		T	T																T		S									S	S		.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																								.	.																																											.	.	.
Template SS confidence
												70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	F	G	V	M	A	V	D	E	N	D	K	I	I	E	F	V	E	K	P	A	N	P	P	S	M	P	N	D	P	S	K	S	L	A	S	M	G	I	Y	V	F	D	A	D	Y	L	Y	E	L	L	E	E	D	D	R	D	E	N	S	S	H	D	F	G	K	D	L	I	P	K	I	T	E	A	G	L	A	Y
Query Conservation
Alig confidence		.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.																						.	.
Template Conservation		.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.																						.	.
Template Sequence		.	.	.	.	I	K	A	V	D	A	N	G	A	V	L	G	T	P	E	R	A	G	L	R	A	V	Q	.	.	.	.	.	.	.	.	.	.	.	T	P	Q	G	F	H	A	D	V	L	R	R	A	.	.	.	.	.	.	Y	A	R	A	T	A	G	G	V	T	D	D	A	S	L	V	E	Q	L	G	T	.	.
Template Known Secondary structure		.	.	.	.						T	T	S								G	G	G						.	.	.	.	.	.	.	.	.	.	.	S													.	.	.	.	.	.		T	T			S	S	S										T	T	T		.	.
Template Predicted Secondary structure		.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.																						.	.
Template SS confidence
						135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.												.	.	160	.	.	.	.	.	.	.	.	.	170							.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	P	F	P	L	S	C	V	Q	S	D	P	D	A	E	P	Y	W	R	D	V	G	T	L	E	A	Y	W	K	A	N	L	D	L	A	S	V	V	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	P	V	Q	I	V	D	G	D	P	L	A	F	K	I	T	T	P	L	D	L	V	L	A	E	A	V	L	A	H	H	H	H
Template Known Secondary structure		.	.	.	.	.	.	.	.									G	G	G					S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions