Job Description P0A6V1 Confidence 99.61% Date Thu Jan 5 11:03:59 GMT 2012 Rank 58 Aligned Residues 334 % Identity 11% Template c2i5kB_ PDB info PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of ugp1p Resolution 3.10 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.							.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.
Query Sequence		K	S	V	A	L	I	L	A	G	G	R	G	T	R	L	K	D	L	T	N	K	R	A	K	P	A	V	H	F	G	G	K	F	R	I	I	D	F	A	L	S	N	C	I	N	S	G	.	.	.	.	.	.	I	R	R	M	G	V	I	T	Q	Y	Q	S	H	T	L	V	Q	H	I	Q	R	G	W	S	F	F	N
Query Conservation																																																	.	.	.	.	.	.
Alig confidence																		.	.	.																													.	.	.	.	.	.																						.	.	.
Template Conservation																		.	.	.																																																								.	.	.
Template Sequence		K	L	A	V	L	K	L	N	G	G	L	G	T	S	M	G	.	.	.	C	V	G	P	K	S	V	I	E	V	R	E	G	N	T	F	L	D	L	S	V	R	Q	I	E	Y	L	N	R	Q	Y	D	S	D	V	P	L	L	L	M	N	S	F	N	T	D	K	D	T	E	H	L	I	K	K	.	.	.	Y	S	A
Template Known Secondary structure		T												G	G	G	T	.	.	.					G	G	G	S				T	T																		T	T											T	T	T									G	G	.	.	.	G	S	S
Template Predicted Secondary structure																		.	.	.																																																								.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.				.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.																			.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query Sequence		E	E	M	N	E	F	V	D	L	L	P	A	Q	Q	R	M	K	G	E	N	W	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	A	D	A	V	T	Q	.	.	N	L	D	I	I	R	R	Y	K	A	E	Y	V	V	I	L	A	G	D	H	I	Y	K	Q	D	Y	S	R	M
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation
Template Sequence		N	R	I	R	I	R	S	F	N	Q	S	R	F	P	R	V	Y	K	D	S	L	L	P	V	P	T	E	Y	D	S	P	L	D	A	W	Y	P	P	G	H	G	D	L	F	E	S	L	H	V	S	G	E	L	D	A	L	I	A	Q	G	R	E	I	L	F	V	S	N	G	D	N	L	G	A	T	V	D	L	K	I
Template Known Secondary structure		S	S	S															T	T	T		S	B				S	T	T	S		G	G	G						T	T	T								T	T								T	T									T	T	B	S	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		L	I	D	H	V	E	K	G	A	R	C	T	V	A	C	M	P	V	P	I	E	E	A	S	A	F	G	V	M	A	V	D	E	N	D	K	I	I	E	F	V	E	K	P	A	N	P	P	S	M	P	N	D	P	.	S	K	S	L	A	S	M	G	I	Y	V	F	D	A	D	Y	L	Y	E	L	L	E	E	D	D
Query Conservation																																																								.
Alig confidence																																																								.
Template Conservation
Template Sequence		L	N	H	M	I	E	T	G	A	E	Y	I	M	E	L	T	D	K	T	R	A	D	V	K	G	G	T	L	I	S	Y	D	G	Q	V	R	L	L	E	V	A	Q	V	P	K	E	H	I	D	E	F	K	N	I	R	K	F	T	N	F	N	T	N	N	L	W	I	N	L	K	A	V	K	R	L	I	E	S	S	N
Template Known Secondary structure								T	T		S										T	T		T	T	S							T	T							G	G	G	S		T	T	T							T	T	T																						T	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.										.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.
Query Sequence		R	D	E	N	S	S	H	D	F	G	K	D	L	I	P	K	I	T	E	A	G	L	A	Y	A	H	P	F	P	L	S	.	.	.	.	.	.	.	.	.	C	V	Q	S	D	P	D	A	E	P	Y	W	R	D	V	G	T	L	E	A	Y	W	K	A	N	L	D	L	A	S	V	V	P	E	L	D	M	Y	D	R
Query Conservation																																	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.
Template Sequence		L	E	.	.	.	.	.	.	.	.	.	.	.	M	E	I	I	P	N	Q	K	T	I	N	V	L	Q	L	E	T	A	C	G	A	A	I	R	H	F	D	G	A	H	G	V	V	V	P	R	S	R	F	L	P	V	K	T	C	S	D	L	L	L	V	.	.	.	.	.	.	.	K	S	D	L	F	R	L	E	H
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.																			G	G	G	G	G	G	G	S	T	T								G	G	G			B			S							T	.	.	.	.	.	.	.	T	S	T	T					T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.
Template SS confidence
		337	.												.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.								390	.	.	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.																					.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	W	P	I	R	T	Y	N	E	S	L	P	P	A	K	F	V	Q	D	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	H	G	M	T	L	N	S	L	V	S	G	G	C	V	I	S	G	S	V	V	V	Q	S	V	L	F	S	R	V	R	V	N	S	F	C	N	I
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	S	L	K	L	D	P	S	R	F	G	P	N	P	L	I	K	L	G	S	H	F	K	K	V	S	G	F	N	A	R	I	P	H	I	P	K	I	V	E	L	D	H	L	T	I	T	G	N	V	F	L	G	K	D	V	T	L	R	G	T	V	I	I	V	C	S	D	G	H	K	I	D	I	P	N	G	S	I	L
Template Known Secondary structure		T						S	S			S	S								G	G	G	S	S									S	S														S	S					T	T													T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	A	V	L	L	P	E	V	W	V	G	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	V	V	V	T	G	N	L	Q	I	L	E	H
Template Known Secondary structure								S		B
Template Predicted Secondary structure
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions