Job Description P75954 Confidence 3.39% Date Wed Jan 25 15:21:04 GMT 2012 Rank 51 Aligned Residues 46 % Identity 17% Template c1zc1A_ PDB info PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.												230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	S	G	C	I	R	L	R	D	D	D	I	K	T	L	F	.	.	.	.	.	.	.	.	.	.	.	S	Q	V	T	P	G	T	K	V	N	I	I	N	T	P	I	K	V	S	A	E	P	N	G	A	R	L	V	E
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	E	G	R	V	Y	L	P	Q	W	M	M	E	T	L	G	I	Q	P	G	S	L	L	Q	I	S	S	T	D	V	P	L	G	Q	F	V	K	L	E	P	Q	S	V	D	F	L	D	I	S	D	P	K	A	V	L	E
Template Known Secondary structure			S	S														T			T	T														S													T	S	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions