Job Description P0AFM6 Confidence 7.61% Date Thu Jan 5 11:26:46 GMT 2012 Rank 92 Aligned Residues 68 % Identity 13% Template c3onjA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:t-snare vti1; PDBTitle: crystal structure of yeast vti1p_habc domain Resolution 1.92 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.
Predicted Secondary structure																																										.	.	.																					.
Query SS confidence																																										.	.	.																					.
Query Sequence		F	S	R	F	A	D	I	V	N	A	N	I	N	A	L	L	E	K	A	E	D	P	Q	K	L	V	R	L	M	I	Q	E	M	E	D	T	L	V	E	V	.	.	.	R	S	T	S	A	R	A	L	A	E	K	K	Q	L	T	R	R	I	E	Q	.	A	S	A	R	E	V	E	W
Query Conservation																																										.	.	.																					.
Alig confidence																																										.	.	.																					.
Template Conservation
Template Sequence		L	A	E	A	P	S	Q	P	L	S	Q	R	N	T	T	L	K	H	V	E	Q	Q	Q	D	E	L	F	D	L	L	D	Q	M	D	V	E	V	N	N	S	I	G	D	A	S	E	R	A	T	Y	K	A	K	L	R	E	W	K	K	T	I	Q	S	D	I	K	R	P	L	Q	S	L
Template Known Secondary structure					G	G	G	S																																																										T
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions