Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	F	N	I	P	T	L	L	T	L	F	R	V	I	L	I	P	F	F	V	L	V	F	Y	L	P	V	T	W	S	P	F	A	A	A	L	I	F	C	V	A	A	V	T	D	W	F	D	G	F	L	A	R	R	W	N	Q	S	T
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	F	G	A	F	L	D	P	V	A	D	K	V	L	V	A	I	A	M	V	L	V	T	E	H	Y	H	S	W	W	V	T	L	P	A	A	T	M	I	A	R	E	I	I	I	S	A	L	R	E	W	M	A	E	L	G	K	R	S	S
Secondary structure
SS confidence
Disorder																																																								?		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	A	V	S	W	I	G	K	V	K	T	T	A	Q	M	V	A	L	A	W	L	L	W	R	P	N	I	W	V	E	Y	A	G	I	A	L	F	F	V	A	A	V	L	T	L	W	S	M	L	Q	Y	L	S	A	A	R	A	D	L	L
Secondary structure
SS confidence
Disorder																												?																																	?
Disorder confidence
		.	.
Sequence		D	Q
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2rkh chain A Region: 40 - 73 Aligned: 34 Modelled: 34 Confidence: 31.4% Identity: 21% PDB header:transcription Chain: A: PDB Molecule:putative apha-like transcription factor; PDBTitle: crystal structure of a putative apha-like transcription factor2 (zp_00208345.1) from magnetospirillum magnetotacticum ms-1 at 2.00 a3 resolution Phyre2 PDB 2voy chain G Region: 57 - 85 Aligned: 29 Modelled: 29 Confidence: 13.1% Identity: 17% PDB header:hydrolase Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus Phyre2 PDB 1ay7 chain B Region: 51 - 76 Aligned: 26 Modelled: 26 Confidence: 7.3% Identity: 19% Fold: Barstar-like Superfamily: Barstar-related Family: Barstar-related Phyre2 1 c2rkhA_ 2 c2voyG_ 3 d1ay7b_

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2rkhA_ 31.4 21 PDB header:transcription Chain: A: PDB Molecule:putative apha-like transcription factor; PDBTitle: crystal structure of a putative apha-like transcription factor2 (zp_00208345.1) from magnetospirillum magnetotacticum ms-1 at 2.00 a3 resolution 2 c2voyG_ 13.1 17 PDB header:hydrolase Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 3 d1ay7b_ 7.3 19 Fold:Barstar-like Superfamily:Barstar-related Family:Barstar-related

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0