Job Description P77306 Confidence 99.33% Date Thu Jan 5 12:27:33 GMT 2012 Rank 4 Aligned Residues 325 % Identity 10% Template c2zv4O_ PDB info PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution Resolution 3.50 Å

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		34	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.																					.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure														.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	R	A	S	A	E	Q	A	F	V	R	T	.	.	G	L	G	G	Q	K	V	V	M	S	G	G	A	I	V	M	P	I	F	H	E	I	I	P	I	N	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	K	L	E	V	S	R	S	T	I	D	S	L	I	T	K	D
Query Conservation														.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.
Template Sequence		Y	R	V	P	H	N	A	A	V	Q	V	Y	D	Y	R	A	K	R	A	R	V	V	F	G	P	E	L	V	T	L	D	P	E	E	Q	F	T	V	L	S	L	S	A	G	R	P	K	R	P	H	A	R	R	A	L	C	L	L	L	G	P	D	F	F	T	D	V	I	T	I	E	.	.	.	.	.	.	T	A	D
Template Known Secondary structure						T	T								T	T	T								T	T							T	T											S	S	S			T	T	S				S	S				S	S											.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																																									.	.	.	.	.	.
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530							.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		R	M	R	V	D	V	V	V	A	F	F	V	R	V	K	P	.	S	V	E	G	I	A	T	A	A	Q	T	L	G	Q	R	T	L	S	P	E	D	L	R	M	L	V	E	D	K	F	V	D	A	L	R	A	T	A	A	Q	M	T	M	H	E	L	Q	D	T	R	E	N	F	V	Q	G	V	Q	N	T	V	A	E
Query Conservation																		.
Alig confidence																		.													.	.	.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence		H	A	R	L	Q	L	Q	L	A	Y	N	W	H	F	E	L	K	N	R	N	D	P	A	E	A	A	K	L	F	.	.	.	.	.	S	V	P	D	F	V	G	D	A	C	K	A	I	A	S	R	V	R	G	A	V	A	S	V	T	F	D	D	F	H	K	N	S	A	R	I	I	R	M	A	V	F	G	F	E	K
Template Known Secondary structure																		S		S	S							G	G	G	.	.	.	.	.	S	S	T	T																		T	T	S																	S	S
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.						.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		D	L	S	K	N	G	L	E	L	E	S	V	S	L	T	N	F	N	Q	T	S	K	E	H	F	N	P	N	N	A	F	D	A	E	G	L	T	K	L	T	.	Q	E	T	E	R	R	R	R	E	R	N	E	V	E	Q	D	V	E	V	A	V	R	E	K	N	R	D	A	L	S	R	K	L	E	I	E	Q	Q	E
Query Conservation																																										.
Alig confidence																																										.
Template Conservation
Template Sequence		A	R	D	Q	A	V	F	P	Q	N	G	L	V	V	S	S	V	D	V	Q	S	V	E	P	V	D	Q	R	T	R	D	A	L	Q	R	S	V	Q	L	A	I	E	I	T	T	N	S	Q	E	A	A	A	K	H	E	A	Q	R	L	E	Q	E	A	R	G	R	L	E	R	Q	K	I	L	D	Q	S	E	A	E	K
Template Known Secondary structure				S					T	T	T	T														S	S
Template Predicted Secondary structure
Template SS confidence
		622	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	M	T	L	E	Q	E	Q	Q	V	K	T	R	T	A	E	Q	N	A	R	I	A	A	F	E	A	E	R	R	R	E	A	E	Q	T	R	I	L	A	E	R	Q	I	Q	E	T	E	I	D	R	E	Q	A	V	R	S	R	K	V	E	A	E	R	E	V	R	I	K	E	I	E	Q	Q	Q	V	T	E	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	K	E	L	L	E	L	E	A	M	S	M	A	V	E	S	T	G	N	A	K	A	E	A	E	S	R	A	E	A	A	R	I	E	G	E	G	S	V	L	Q	A	K	L	K	A	Q	A	L	A	I	E	T	E	A	E	L	E	R	V	K	K	V	R	E	M	E	L	I	Y	A	R	A	Q	L	E	L	E	V
Template Known Secondary structure																																																						T	T	T	T	T																		T
Template Predicted Secondary structure
Template SS confidence
		702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	T	K	S	I	A	I	A	A	K	S	E	Q	Q	S	Q	A	E	A	R	A	N	L	A	L	A	E	A	V	S	A	Q	Q	N	V	E	T	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	K	A	Q	Q	L	A	N	V	E	A	K	K	F	K	E	M	T	E	A	L	G	P	G	T	I	R	D	L	A	V	A	G	P	E	M	Q	V	K	L
Template Known Secondary structure																						S		T	T							T				.	.	.	.	.	.
Template Predicted Secondary structure
Template SS confidence
		782	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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