Job Description P00960 Confidence 100.00% Date Thu Jan 5 10:57:22 GMT 2012 Rank 2 Aligned Residues 282 % Identity 65% Template c3rf1B_ PDB info PDB header:ligase Chain: B: PDB Molecule:glycyl-trna synthetase alpha subunit; PDBTitle: the crystal structure of glycyl-trna synthetase subunit alpha from2 campylobacter jejuni subsp. jejuni nctc 11168 Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	Q	G	L	I	L	T	L	Q	D	Y	W	A	R	Q	G	C	T	I	V	Q	P	L	D	M	E	V	G	A	G	T	S	H	P	M	T	C	L	R	E	L	G	P	E	P	M	A	A	A	Y	V	Q	P	S	R	R	P	T	D	G	R	Y	G	E	N	P	N	R	L	Q	H	Y	Y	Q	F	Q	V	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	F	S	Q	X	I	L	N	L	Q	N	Y	W	Q	E	Q	G	C	A	I	X	Q	P	Y	D	X	P	A	G	A	G	T	F	H	P	A	T	F	L	R	S	L	G	K	K	P	W	A	A	A	Y	V	A	P	S	R	R	P	T	D	G	R	Y	G	E	N	P	N	R	L	G	A	Y	Y	Q	F	Q	V	L	I
Template Known Secondary structure																	T	T								S	S			S	S	G	G	G	S					T	T	T	S	S	S														G	G	G			T	T	T		S	S			S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	S	P	D	N	I	Q	E	L	Y	L	G	S	L	K	E	L	G	M	D	P	T	I	H	D	I	R	F	V	E	D	N	W	E	N	P	T	L	G	A	W	G	L	G	W	E	V	W	L	N	G	M	E	V	T	Q	F	T	Y	F	Q	Q	V	G	G	L	E	C	K	P	V	T	G	E	I	T	Y	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P	S	P	D	N	I	Q	E	L	Y	L	K	S	L	E	N	L	G	F	D	L	K	S	H	D	I	R	F	V	E	D	N	W	E	S	P	S	L	G	A	W	G	L	G	W	E	V	W	L	D	G	X	E	V	T	Q	F	T	Y	F	Q	Q	V	G	G	I	A	V	D	L	V	S	A	E	I	T	Y	G	L
Template Known Secondary structure			S			S	T													T			S	S	S	S												T	T	T	T											T	T													T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	L	A	M	Y	I	Q	G	V	D	S	V	Y	D	L	V	W	S	D	G	P	L	G	K	T	T	Y	G	D	V	F	H	Q	N	E	V	E	Q	S	T	Y	N	F	E	Y	A	D	V	D	F	L	F	T	C	F	E	Q	Y	E	K	E	A	Q	Q	L	L	A	L	E	N	P	L	P	L	P	A	Y	E	R
Query Conservation
Alig confidence																																																																				.	.
Template Conservation																																																																				.	.
Template Sequence		E	R	I	A	X	Y	L	Q	N	V	D	N	V	Y	D	I	V	W	S	E	F	N	G	E	K	I	K	Y	A	D	V	H	K	Q	S	E	Y	E	F	S	K	Y	N	F	E	V	S	D	V	K	I	L	N	E	Q	F	E	N	S	Y	K	E	C	K	N	I	.	.	L	E	Q	G	L	A	L	P	A	Y	D	Y
Template Known Secondary structure										T		S	S	S	T	T	S						T	T																							T																					.	.			T	T
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	K	A	A	H	S	F	N	L	L	D	A	R	K	A	I	S	V	T	E	R	Q	R	Y	I	L	R	I	R	T	L	T	K	A	V	A	E	A	Y	Y	A	S	R	E	A	L
Query Conservation
Alig confidence																																										.	.	.
Template Conservation																																										.	.	.
Template Sequence		C	X	L	A	A	H	T	F	N	L	L	D	A	R	G	A	I	S	V	A	Q	R	Q	D	Y	X	L	K	I	R	E	L	S	K	N	C	A	E	I	Y	.	.	.	K	K	N	L
Template Known Secondary structure																T				S	S	T																				.	.	.
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions