Job Description P00960 Confidence 97.21% Date Thu Jan 5 10:57:22 GMT 2012 Rank 12 Aligned Residues 173 % Identity 20% Template c3pcoC_ PDB info PDB header:ligase Chain: C: PDB Molecule:phenylalanyl-trna synthetase, alpha subunit; PDBTitle: crystal structure of e. coli phenylalanine-trna synthetase complexed2 with phenylalanine and amp Resolution 3.02 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.									.	.	.	.	.	40	.	.	.													.	.	.	.												.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	Q	G	L	I	L	T	L	Q	D	Y	W	A	R	Q	G	C	T	I	V	Q	P	L	D	M	E	.	.	.	.	.	.	.	.	V	G	A	G	T	S	H	P	M	.	.	.	.	.	.	.	.	.	.	.	.	T	C	L	R	.	.	.	.	.	.	.	.	.	.	.	E	L	G	P	E	P	M	A	A	A
Query Conservation																												.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	T	R	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	D	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	Q	Q	P	P	I	R	I	I
Template Known Secondary structure																T	T								S								T	T	T	T	T			S	S	S	T					T	T	B		B	S	S	S	S					S		T	T								T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.
Predicted Secondary structure																																.	.	.																																											.
Query SS confidence																																.	.	.																																											.
Query Sequence		Y	V	Q	P	S	R	R	P	T	D	G	R	Y	G	E	N	P	N	R	L	Q	H	Y	Y	Q	F	Q	V	V	I	.	.	.	K	P	S	P	D	N	I	Q	E	L	Y	L	G	S	L	K	E	L	G	M	D	P	T	I	H	D	I	R	F	V	E	D	N	W	E	N	P	T	L	G	A	W	.	G	L	G	W
Query Conservation																																.	.	.																																											.
Alig confidence										.									.	.	.	.										.	.	.																						.	.												.	.	.	.	.	.			.
Template Conservation										.									.	.	.	.																																		.	.												.	.	.	.	.	.
Template Sequence		A	P	G	R	V	Y	R	N	.	D	Y	D	Q	T	H	T	P	.	.	.	.	M	F	H	Q	M	E	G	L	I	V	D	T	N	I	S	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F	F	E	E	.	.	D	L	Q	I	R	F	R	P	S	Y	F	.	.	.	.	.	.	P	F	T	E	P	S	A
Template Known Secondary structure								B	S	.			B	T	T	B		S	.	.	.	.												S	S																		S	S	S	.	.												.	.	.	.	.	.	T	T
Template Predicted Secondary structure										.									.	.	.	.																																		.	.												.	.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.							.	250	.	.	.	.	.
		134	.	.	.	.	.						140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.												.	.	.	.											.
Query SS confidence								.	.	.	.	.												.	.	.	.											.
Query Sequence		E	V	W	L	N	G	.	.	.	.	.	M	E	V	T	Q	F	T	Y	F	Q	Q	.	.	.	.	V	G	G	L	E	C	K	P	V	T	.	G	E	I	T	Y	G	L	E	R	L	A	M	Y	I	Q	G	V	D	S	V	Y	D	L	V	W	S	D	G	P	L	G	K	T	T	Y
Query Conservation								.	.	.	.	.												.	.	.	.											.
Alig confidence								.	.	.	.	.												.	.	.	.											.																								.
Template Conservation																																																														.
Template Sequence		E	V	D	V	M	G	K	N	G	K	W	L	E	V	L	G	C	G	M	V	H	P	N	V	L	R	N	V	G	I	D	P	E	V	Y	S	G	F	A	F	G	M	G	M	E	R	L	T	M	L	R	Y	G	V	T	D	L	R	S	F	.	F	E	N	D	L	R	F	L	K	Q	F
Template Known Secondary structure					B			S	S	S	S		B															T	T	T			T	T	T																			T		S		G	G	G	G	.	S	S								T	T
Template Predicted Secondary structure																																																														.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions