Job Description P00960 Confidence 96.91% Date Thu Jan 5 10:57:22 GMT 2012 Rank 17 Aligned Residues 180 % Identity 19% Template c3i7fA_ PDB info PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica Resolution 2.80 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		T	R	T	F	Q	G	L	I	L	T	L	Q	D	Y	W	A	R	Q	G	C	T	I	V	Q	P	L	D	M	E	V	G	A	G	T	S	H	P	M	T	C	L	R	.	E	L	G	P	E	P	M	A	A	A	Y	V	Q	P	S	R	R	P	T	D	G	R	Y	G	E	N	P	N	R	L	Q	H	Y	Y	Q	F	Q
Query Conservation																																												.
Alig confidence																						.																						.																							.	.	.	.				.	.
Template Conservation																						.																																													.	.	.	.				.	.
Template Sequence		F	R	I	Q	S	A	C	C	G	L	F	R	E	F	L	T	S	Q	K	F	.	V	E	I	H	T	P	K	L	I	A	Y	L	A	Q	S	P	Q	L	Y	K	Q	M	A	I	M	G	D	F	R	K	V	F	E	V	G	P	V	F	R	A	E	N	S	N	.	.	.	.	T	R	R	.	.	H	L	T	E	F	E
Template Known Secondary structure																			T	T		.							S	B				B		S		T									T	T	T														S				.	.	.	.	S	S	S	.	.			S
Template Predicted Secondary structure																						.																																													.	.	.	.				.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.					.	.	.			.	.	.	310	.	.
		85	.	.																																																		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query Sequence		V	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	S	P	D	N	I	Q	E	L	Y	L	G	S	L	K	E	L	G	M	D	P	T	I	H	D	.	.
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation
Template Sequence		G	L	D	I	E	M	E	I	V	E	N	Y	H	E	C	I	D	V	M	E	K	L	F	T	F	I	F	D	E	I	P	K	R	F	P	D	E	L	K	V	I	R	K	Q	Y	P	F	E	D	L	I	Y	R	P	F	L	R	L	T	Y	K	E	A	I	E	M	L	R	A	S	G	E	T	I	G	D	Y	D	D	F
Template Known Secondary structure										S	S		T																																	S									S																T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
																					114	.	.	.	.	.	120										.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	F	V	E	D	N	.	.	.	.	.	.	.	.	.	W	E	N	P	T	L	G	A	W	G	L	G	W	E	V	W	L	N	G	M	E	V	T	Q	F	T	Y	F	Q	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	P	Q	E	V	K	L	G	E	L	I	K	A	K	Y	N	T	D	F	Y	I	L	D	K	F	P	A	A	I	R	P	F	Y	T	M	P	D	I	D	D	P	N	Y	S	N	S	Y	D	V	F	V	R	G	Q	E	I	T	S	G	A	Q	R	I	H	D	P	E	F	L	M	K	R	C	I	E	K	G	V	D
Template Known Secondary structure																				S								B	G	G	G	S		T	T	B		B		S	S		T	T	B	B	S							T	T																							T	T
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
											152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																	.
Query Sequence		.	.	.	.	.	.	.	.	.	G	G	L	E	C	K	P	V	T	G	E	I	T	Y	G	L	E	R	L	A	M	Y	I	Q	G	V	D	S	V	Y	D	L	.	V	W	S	D	G	P	L	G	K
Query Conservation		.	.	.	.	.	.	.	.	.																																	.
Alig confidence		.	.	.	.	.	.	.	.	.																																	.
Template Conservation
Template Sequence		P	A	T	L	K	D	Y	I	E	S	F	R	F	G	S	W	P	H	A	G	C	G	I	G	L	E	R	I	T	M	L	Y	L	G	I	P	N	I	R	K	V	T	L	F	P	R	D	P	I	R	L
Template Known Secondary structure		G	G	G	G						T	T	S	S																				T	T		S		G	G	G	G	S	S	S			B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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