Job Description P00960 Confidence 100.00% Date Thu Jan 5 10:57:22 GMT 2012 Rank 5 Aligned Residues 252 % Identity 20% Template c3hxxA_ PDB info PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp Resolution 2.11 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.										.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.					.	.	.	.	70	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.												.	.																											.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.												.	.																											.	.	.	.
Query Sequence		R	T	F	Q	G	L	I	L	T	L	Q	D	Y	W	A	R	Q	G	C	T	I	V	.	.	.	.	.	.	.	.	.	Q	P	L	D	M	E	V	G	A	G	T	.	.	S	H	P	M	T	C	L	R	E	L	G	P	E	P	M	A	A	A	Y	V	Q	P	S	R	R	P	.	.	.	.	T	D	G	R	Y	G
Query Conservation																								.	.	.	.	.	.	.	.	.												.	.																											.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.												.	.					.																						.	.	.	.
Template Conservation																																																		.
Template Sequence		K	S	T	A	E	I	R	Q	A	F	L	D	F	F	H	S	K	G	H	Q	V	V	A	S	S	S	L	V	P	H	N	D	P	T	L	L	F	T	N	A	G	M	N	Q	F	K	D	V	.	F	L	G	L	D	K	R	N	Y	S	R	A	T	T	S	Q	R	C	V	R	A	G	G	K	H	N	D	L	E	N	V
Template Known Secondary structure																		T	T									S	S		T	T		S	S		S	S			S	T	T	G	G	G				.			T	S	S			S		S													T	T				T	T	T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.									.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	N	P	N	R	L	Q	H	Y	Y	Q	F	Q	V	V	I	K	P	S	P	D	N	I	Q	E	L	.	.	.	.	.	.	.	.	Y	L	G	S	L	K	E	L	G	M	D	P	T	I	H	D	I	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.																				.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.
Template Sequence		G	Y	T	A	R	.	.	H	H	T	F	F	E	M	L	G	N	F	S	F	G	D	Y	F	K	L	D	A	I	L	F	A	W	L	L	L	T	S	E	K	W	F	A	L	P	K	E	R	L	W	V	T	V	Y	E	S	D	D	E	A	Y	E	I	W	E	K	E	V	G	I	P	R	E	R	I	I	R	I	G	D
Template Known Secondary structure		T	T	S	S	S	.	.			S										S	S	S																	T	T	T	T				G	G	G							T	T											T	T				G	G	G						S
Template Predicted Secondary structure							.	.
Template SS confidence
		81	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
									117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.																				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	V	E	D	N	W	E	N	P	T	L	G	A	W	G	L	G	W	E	V	W	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	M	E	V	T	Q	F	T	Y	F	Q	Q	V	G	G	.	.	.	.	.	L	E	C	K	P	V	T	G	E	I	T	Y
Query Conservation		.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation
Template Sequence		N	K	G	A	P	Y	A	S	D	N	F	W	Q	M	G	D	T	G	P	C	G	P	C	T	E	I	F	Y	D	H	G	D	H	I	W	G	G	P	P	G	S	P	E	E	D	G	D	R	Y	I	E	I	W	N	I	V	F	M	Q	F	N	R	Q	A	D	G	T	M	E	P	L	P	K	P	S	V	D	T	G	M
Template Known Secondary structure		T	T	S	S	T	T		B	T	T				S	S	S	S															T	T	S					T	T	S	T	T	T	T	S	S	S																T	T	S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		G	L	E	R	L	A	M	Y	I	Q	G	V	D	S	V	Y	D	L	.	V	W	S	D	G	P	L	G	K	T	T	Y	G	D	V	F	H	Q	N	E	V	E	Q	S	T	Y	N	F	E	Y	A	D	V	D	F	L	F	T	C	F	E	Q	Y	E	K	E	A	Q	Q	L	L	A	L	E	N	P	L	P	L	P	A
Query Conservation																				.
Alig confidence																				.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	E	R	I	A	A	V	L	Q	H	V	N	S	N	Y	D	I	D	L	F	R	T	L	I	Q	A	V	A	K	V	T	G	A	T	D	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	S	L	R	V	I	A	D
Template Known Secondary structure											T	T		S	S	G	G	G	S																		S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.																																		.	.	.	280	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	R	I	L	K	A	A	H	S	F	N	L	L	D	A	R	K	A	I	S	V	T	E	R	Q	R	Y	I	L	R	I	R	T	L	T	K	A	V	A	E	A	Y	Y	A	S	R	E	A	L	G	F	P	M	C	N	K
Query Conservation
Alig confidence							.	.	.	.							.	.															.
Template Conservation							.	.	.	.							.	.															.
Template Sequence		H	I	R	S	C	.	.	.	.	A	F	L	I	A	D	.	.	G	V	M	P	S	N	E	N	R	G	Y	V	L	R	.	R	I	I	R	R	A	V	R	H	G	N	M	L	G	A	K	E	T	F	F	Y	K	L	V	G
Template Known Secondary structure							.	.	.	.						T	.	.	T					S	S								.														T			S			G	G	G	G
Template Predicted Secondary structure							.	.	.	.							.	.															.
Template SS confidence
		286	.	.	.	290					.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions