Job Description P00960 Confidence 85.40% Date Thu Jan 5 10:57:22 GMT 2012 Rank 42 Aligned Residues 137 % Identity 17% Template c3errB_ PDB info PDB header:ligase Chain: B: PDB Molecule:fusion protein of microtubule binding domain from PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase Resolution 2.27 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.													90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	M	A	A	A	Y	V	Q	P	S	R	R	P	T	D	G	R	Y	G	E	N	P	N	R	L	Q	H	Y	Y	Q	F	Q	V	V	I	K	P	.	.	.	.	.	.	.	.	.	.	.	.	S	P	D	N	I	Q	E	L	Y	L	G	S	L	K	E	L	G	M	D	P	T	I	H	D	I	R	F	V	E	D	N
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation																																																																						.	.	.	.
Template Sequence		P	L	R	Y	A	G	Y	A	P	A	F	R	S	E	A	G	S	F	G	K	D	V	R	G	L	M	R	V	H	Q	F	H	K	V	E	Q	Y	V	L	T	E	A	S	L	E	A	S	D	R	A	F	Q	E	L	L	E	N	A	E	E	I	L	R	L	L	E	L	P	.	.	.	.	Y	R	L	V	E	V	A	T
Template Known Secondary structure		S															S			S	S	S		S	S	S	S	S		S													S																							T	T			.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.					.	.	.	.	.	.	.	320
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.														.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																					.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Query SS confidence																					.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Query Sequence		W	E	N	P	T	L	G	A	W	G	L	G	W	E	V	W	L	N	G	.	.	.	.	M	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	F	T	Y	F	Q	Q	V	G	G	L	E	C	K	P	V	T	G	E	I	T	Y	G	L	E	R	L	A	M	Y	I	Q	G	V	D	S	V	Y	D	.
Query Conservation																					.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Alig confidence																					.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Conservation
Template Sequence		G	D	M	G	P	G	K	W	R	Q	V	D	I	E	V	Y	L	P	S	E	G	R	Y	R	E	T	H	S	C	S	A	L	L	D	W	Q	A	R	R	A	N	L	R	Y	R	D	P	E	G	R	V	R	Y	A	Y	T	L	N	N	T	A	L	A	T	P	R	I	L	A	M	L	L	E	N	H	Q	L	Q	D	G
Template Known Secondary structure						S	S		S										G	G	G	T												T	T							T						T	T	S																T											B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
			183	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	L	V	W	S	D	G	P	L	G	K	T
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		R	V	R	V	P	Q	A	L	I	P	Y	M
Template Known Secondary structure							G	G	G
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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