Job Description P00960 Confidence 100.00% Date Thu Jan 5 10:57:22 GMT 2012 Rank 3 Aligned Residues 280 % Identity 23% Template c2zzfA_ PDB info PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of alanyl-trna synthetase without2 oligomerization domain Resolution 2.70 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.				.	.	.	.	.										.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																		.	.	.						.	.	.	.	.	.	.	.	.												.	.
Query SS confidence																		.	.	.						.	.	.	.	.	.	.	.	.												.	.
Query Sequence		T	F	Q	G	L	I	L	T	L	Q	D	Y	W	A	R	Q	.	.	.	G	C	T	I	V	.	.	.	.	.	.	.	.	.	Q	P	L	D	M	E	V	G	A	G	T	.	.	S	H	P	M	T	C	L	R	E	L	G	P	E	P	M	A	A	A	Y	V	Q	P	S	R	R	P	T	D	G	R	Y	G	E	N
Query Conservation																		.	.	.						.	.	.	.	.	.	.	.	.												.	.
Alig confidence																		.	.	.						.	.	.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		T	L	D	E	M	R	E	K	F	L	R	F	F	E	K	H	E	I	Y	P	H	G	R	V	K	R	Y	P	V	L	P	R	W	R	D	D	V	L	L	V	G	A	S	I	M	D	F	Q	P	W	V	I	S	G	E	A	D	P	P	A	N	P	L	V	I	S	Q	P	S	I	R	F	T	D	I	D	N	V	G	I
Template Known Secondary structure																T		S	S	S										S	S		T	T		S	S		S	S			S	G	G	G	G	G	T	T	T	T	T	T	T	S	S			S	S	S	S										S	T	T	G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.						.	.	.	.							.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																						.	.	.	.	.					.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.					.	.	.	.	.	.
Query Sequence		P	N	R	L	Q	H	Y	Y	Q	F	Q	V	V	I	K	P	S	P	D	N	.	.	.	.	.	I	Q	E	L	.	.	.	.	.	.	Y	L	G	S	L	K	E	L	G	M	D	P	T	I	H	D	I	R	F	V	E	D	N	W	E	N	P	T	L	G	A	W	G	L	G	W	E	V	W	L	N	G	M	E	V
Query Conservation																						.	.	.	.	.					.	.	.	.	.	.
Alig confidence					.	.																.	.	.	.	.					.	.	.	.	.	.															.	.											.	.
Template Conservation					.	.																																													.	.											.	.
Template Sequence		T	G	R	.	.	H	F	T	I	F	E	M	M	A	H	H	A	F	N	Y	P	G	K	P	I	Y	W	M	D	E	T	V	E	L	A	F	E	F	F	T	K	E	L	K	M	K	P	E	D	.	.	I	T	F	K	E	N	P	W	A	G	.	.	G	G	N	A	G	P	A	F	E	V	L	Y	R	G	L	E	V
Template Known Secondary structure		S	S	S	.	.			S												B	T	T	B																			T	S				G	G	G	.	.											.	.	S	S											T	T
Template Predicted Secondary structure					.	.																																													.	.											.	.
Template SS confidence
		138	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		143	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210						.	.	.	.	.	.
Predicted Secondary structure														.																																																									.	.	.	.	.
Query SS confidence														.																																																									.	.	.	.	.
Query Sequence		T	Q	F	T	Y	F	Q	Q	V	G	G	L	.	E	C	K	P	V	T	G	E	I	T	Y	G	L	E	R	L	A	M	Y	I	Q	G	V	D	S	V	Y	D	L	V	W	S	D	G	P	L	G	K	T	T	Y	G	D	V	F	H	Q	N	E	V	E	Q	S	T	Y	N	.	.	.	.	.	F	E	Y	A	D	V
Query Conservation														.																																																									.	.	.	.	.
Alig confidence														.																																																									.	.	.	.	.
Template Conservation
Template Sequence		A	T	L	V	F	M	Q	Y	K	K	K	Y	I	P	M	E	T	K	V	V	D	T	G	Y	G	L	E	R	L	V	W	M	S	Q	G	T	P	T	A	Y	D	A	V	L	G	Y	V	V	E	P	L	K	K	M	A	G	I	E	K	I	D	E	K	I	L	M	E	N	S	R	L	A	G	M	F	D	I	E	D	L
Template Known Secondary structure																																						S	S						S												T																			S				S	T
Template Predicted Secondary structure
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230									.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.
Query Sequence		D	F	L	F	T	C	F	E	Q	Y	E	K	E	A	.	.	.	.	.	.	.	.	Q	Q	L	L	A	L	E	N	P	L	P	L	P	A	Y	E	R	I	L	K	A	A	H	S	F	N	L	L	D	A	R	K	A	I	S	V	T	E	R	Q	R	Y	I	L	R	I	R	T	L	T	K	A	V	A	E	A	Y	Y
Query Conservation																.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.																				.	.	.	.							.	.															.
Template Conservation																																											.	.	.	.							.	.															.
Template Sequence		G	D	L	R	Y	L	R	E	Q	V	A	K	R	V	G	I	T	V	E	E	L	E	K	A	I	R	P	Y	E	L	I	Y	A	I	A	D	H	T	K	A	L	.	.	.	.	T	F	M	L	A	D	.	.	G	V	V	P	S	N	V	K	A	G	Y	L	A	R	.	L	L	I	R	K	S	I	R	H	L	R	E
Template Known Secondary structure		T														T	S																										.	.	.	.						T	.	.	T				S	S	S								.
Template Predicted Secondary structure																																											.	.	.	.							.	.															.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.					.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.	380
		289	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	R	E	A	L	G	F	P	M	C	N	K
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		L	G	L	E	V	P	.	L	S	E	I	V	A
Template Known Secondary structure		T	T					.
Template Predicted Secondary structure								.
Template SS confidence
		381	.	.	.	.	.		.	.	.	390	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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