Job Description P00960 Confidence 100.00% Date Thu Jan 5 10:57:22 GMT 2012 Rank 4 Aligned Residues 270 % Identity 21% Template c2ztgA_ PDB info PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna2 synthetase lacking the c-terminal dimerization domain in3 complex with ala-sa Resolution 2.20 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.										.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.												.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.												.	.
Query Sequence		T	F	Q	G	L	I	L	T	L	Q	D	Y	W	A	R	Q	G	C	T	I	V	.	.	.	.	.	.	.	.	.	Q	P	L	D	M	E	V	G	A	G	T	.	.	S	H	P	M	T	C	L	R	E	L	G	P	E	P	M	A	A	A	Y	V	Q	P	S	R	R	P	T	D	G	R	Y	G	E	N	P	N	R
Query Conservation																							.	.	.	.	.	.	.	.	.												.	.
Alig confidence																							.	.	.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		E	L	D	E	X	R	E	Y	Y	L	N	F	F	E	R	R	G	H	G	R	I	E	R	Y	P	V	V	A	R	W	R	T	D	I	Y	L	T	I	A	S	I	A	D	F	Q	P	F	V	T	S	G	V	A	P	P	P	A	N	P	L	T	I	S	Q	P	C	I	R	L	D	D	L	D	S	V	G	R	T	G	R
Template Known Secondary structure																T	T	T									S	B		T	T		S	S	B	S	B			S	G	G	G	G	G	T	T	T	T	T	T	S	S	S			S	S	S	S										G	G	G	G	G	G	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.											.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	H	Y	Y	Q	F	Q	V	V	I	K	P	S	P	D	N	.	.	.	.	.	.	.	.	.	.	I	Q	E	L	Y	L	G	S	L	K	E	L	G	M	D	P	T	I	H	D	I	R	F	V	E	D	N	W	E	N	P	T	L	G	A	W	G	L	G	W	E	V	W	L	N	G	M	E	V	T	Q	F	T
Query Conservation																			.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																.	.	.	.	.	.	.	.	.	.																			.	.											.	.
Template Conservation		.	.																																												.	.											.	.
Template Sequence		.	.	H	L	T	L	F	E	X	X	A	H	H	A	F	N	Y	P	G	K	E	I	Y	W	K	N	E	T	V	A	Y	C	T	E	L	L	N	E	L	G	V	K	K	E	D	.	.	I	V	Y	K	E	E	P	W	A	G	.	.	G	G	N	A	G	P	C	L	E	A	I	V	G	G	L	E	V	A	T	L	V
Template Known Secondary structure		.	.			S												B	T	T	B		S																		T			G	G	G	.	.											.	.	T	T											T	T
Template Predicted Secondary structure		.	.																																												.	.											.	.
Template SS confidence
				141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		147	.	.	150	.	.	.													.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	F	Q	Q	V	G	G	.	.	.	.	.	.	.	.	.	.	.	.	L	E	C	K	P	V	T	G	E	I	T	Y	G	L	E	R	L	A	M	Y	I	Q	G	V	D	S	V	Y	D	L	V	W	S	D	G	P	L	G	K	T	T	Y	G	D	V	F	H	Q	N	E	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	X	N	L	E	E	H	P	E	G	D	I	E	I	K	G	A	R	Y	R	K	X	D	N	Y	I	V	D	T	G	Y	G	L	E	R	F	V	W	A	S	K	G	T	P	T	V	Y	D	A	I	F	P	E	V	V	D	T	I	I	D	N	S	N	V	S	F	N	R	E	D	E	R	V	R	R	I	V	A	E	S
Template Known Secondary structure									T	T						T	T																												S	S																T	S			S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
				204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure		.	.																							.	.	.	.	.
Query SS confidence		.	.																							.	.	.	.	.
Query Sequence		.	.	V	E	Q	S	T	Y	N	F	E	Y	A	D	V	D	F	L	F	T	C	F	E	Q	.	.	.	.	.	Y	E	K	E	A	Q	Q	L	L	A	L	E	N	P	L	P	L	P	A	Y	E	R	I	L	K	A	A	H	S	F	N	L	L	D	A	R	K	A	I	S	V	T	E	R	Q	R	Y	I	L	R	I
Query Conservation		.	.																							.	.	.	.	.
Alig confidence		.	.																							.	.	.	.	.																									.	.	.	.							.	.															.
Template Conservation																																																							.	.	.	.							.	.															.
Template Sequence		S	K	L	A	G	I	X	G	E	L	R	G	E	R	L	N	Q	L	R	K	S	V	A	D	T	V	G	V	S	V	E	E	L	E	G	I	V	V	P	L	E	K	V	Y	S	L	A	D	H	T	R	C	I	.	.	.	.	L	F	X	L	G	D	.	.	G	L	V	P	S	N	A	G	A	G	Y	L	A	R	.
Template Known Secondary structure									T	T			T															S	S																										.	.	.	.						T	.	.	T					S	S								.
Template Predicted Secondary structure																																																							.	.	.	.							.	.															.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.					.	.	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	L	T	K	A	V	A	E	A	Y	Y	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	X	I	R	R	S	L	R	L	A	E	E	L	E
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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