Job Description P00960 Confidence 82.50% Date Thu Jan 5 10:57:22 GMT 2012 Rank 50 Aligned Residues 131 % Identity 15% Template c2cj9A_ PDB info PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of methanosarcina barkeri seryl-trna2 synthetase complexed with an analog of seryladenylate Resolution 2.3 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		53	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.											90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure											.																													.	.	.	.	.	.	.	.	.	.																.
Query SS confidence											.																													.	.	.	.	.	.	.	.	.	.																.
Query Sequence		P	M	A	A	A	Y	V	Q	P	.	S	R	R	P	T	D	G	R	Y	G	E	N	P	N	R	L	Q	H	Y	Y	Q	F	Q	V	V	I	K	P	.	.	.	.	.	.	.	.	.	.	S	P	D	N	I	Q	E	L	Y	L	G	S	L	K	E	.	L	G	M	D	P	T	I	H	D	I	R	F	V	E	D	N
Query Conservation											.																													.	.	.	.	.	.	.	.	.	.																.
Alig confidence											.						.	.	.	.																				.	.	.	.	.	.	.	.	.	.																.					.	.	.	.
Template Conservation																	.	.	.	.																																																		.	.	.	.
Template Sequence		P	V	K	V	F	D	R	S	G	T	S	H	R	Y	E	.	.	.	.	S	G	G	I	H	G	I	E	R	V	D	E	F	H	R	I	E	I	V	W	I	G	T	K	E	E	V	L	K	C	A	E	E	L	H	D	R	Y	M	H	I	F	N	D	I	L	D	I	E	.	.	.	.	W	R	K	A	R	V	T	P
Template Known Secondary structure		S							S	S							.	.	.	.		S	S				T	T	S		S																																		T	S				.	.	.	.							S
Template Predicted Secondary structure																	.	.	.	.																																																		.	.	.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.					.	.	390	.	.	.	.	.
		121										.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.								.	.	140	.	.	.	.	.	.	.	.											.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query Sequence		W	.	.	.	.	.	.	.	.	.	E	N	P	T	L	G	A	W	G	L	G	W	E	V	W	L	.	.	.	.	.	.	.	N	G	M	E	V	T	Q	F	T	Y	F	.	.	.	.	.	.	.	.	.	.	Q	Q	V	G	G	L	E	C	K	P	V	T	G	E	I	T	Y	G	L	E	R	L	A	M	Y	I
Query Conservation			.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.							.	.
Template Conservation																																																														.	.
Template Sequence		W	F	M	A	Q	E	G	L	L	G	L	A	E	E	N	T	V	G	T	T	D	Y	E	A	C	L	P	Y	R	G	P	D	G	E	W	L	E	F	Q	N	V	S	I	N	G	D	K	Y	P	K	G	F	N	V	K	L	Q	S	G	D	.	.	E	L	W	S	G	C	S	G	V	G	L	E	R	W	A	A	V	F
Template Known Secondary structure							T	T			S			S	S	S	S											G	G	G		T	T														T							T				T	T			.	.
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.			.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	V	D	S	V	Y	D	L	V	W	S	D	G	P	L	G	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	Q	K	G	L	D	P	A	N	W	P	E	E	F	R	N	R	V
Template Known Secondary structure							S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions