Job Description P00960 Confidence 100.00% Date Thu Jan 5 10:57:22 GMT 2012 Rank 6 Aligned Residues 255 % Identity 18% Template c1yfsB_ PDB info PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine Resolution 2.08 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.										.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.												.	.																												.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.												.	.																												.	.	.	.
Query Sequence		T	F	Q	G	L	I	L	T	L	Q	D	Y	W	A	R	Q	G	C	T	I	V	.	.	.	.	.	.	.	.	.	Q	P	L	D	M	E	V	G	A	G	T	.	.	S	H	P	M	T	C	L	R	E	L	G	P	E	P	M	A	A	A	Y	V	Q	P	S	R	R	P	T	.	.	.	.	D	G	R	Y	G	E
Query Conservation																							.	.	.	.	.	.	.	.	.												.	.																												.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.												.	.					.																							.	.	.	.
Template Conservation																																																	.
Template Sequence		S	A	H	E	I	R	E	L	F	L	S	F	F	E	K	K	G	H	T	R	V	K	S	A	P	L	V	P	E	N	D	P	T	L	L	F	V	N	A	G	M	V	P	F	K	N	V	.	F	L	G	L	E	K	R	P	Y	K	R	A	T	S	C	Q	K	C	L	R	V	S	G	K	H	N	D	L	E	Q	V	G
Template Known Secondary structure																	T	T									S	S		S	S		T	T		S	S			S	T	T	G	G	G				.			S	S	S			S		S													T	T				G	G	G	T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.							.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																												.	.	.
Predicted Secondary structure																											.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	P	N	R	L	Q	H	Y	Y	Q	F	Q	V	V	I	K	P	S	P	D	N	I	Q	E	L	.	.	.	.	.	.	Y	L	G	S	L	K	E	L	G	M	D	P	T	I	H	D	I	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	D
Query Conservation																											.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.																				.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.
Template Sequence		Y	T	S	R	.	.	H	H	T	F	F	E	M	L	G	N	F	S	F	G	D	Y	F	K	K	E	A	I	E	Y	A	W	E	F	V	T	E	V	L	K	L	P	K	E	K	L	Y	V	S	V	Y	K	D	D	E	E	A	Y	R	I	W	N	E	H	I	G	I	P	S	E	R	I	W	R	L	G	E	E	D	N
Template Known Secondary structure		T	S	S	S	.	.			S											S	S																T	T	S				G	G	G							T	T										T	T	T				G	G	G
Template Predicted Secondary structure						.	.
Template SS confidence
		82	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.											.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																															.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																															.
Query Sequence		N	W	E	N	P	T	L	G	A	W	G	L	G	W	E	V	W	L	N	.	.	.	.	.	.	.	.	.	.	G	M	E	V	T	Q	F	T	Y	F	Q	Q	V	G	G	.	.	.	.	.	L	E	C	K	P	V	T	G	E	I	T	Y	G	L	E	R	L	A	M	Y	I	Q	G	V	D	S	V	Y	D	L	.
Query Conservation																					.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																															.
Alig confidence																					.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																															.
Template Conservation
Template Sequence		F	W	Q	M	G	D	V	G	P	C	G	P	S	S	E	I	Y	V	D	R	G	E	E	Y	E	G	D	E	R	Y	L	E	I	W	N	L	V	F	M	Q	Y	N	R	D	E	N	G	V	L	T	P	L	P	H	P	N	I	D	T	G	M	G	L	E	R	I	A	S	V	L	Q	G	K	N	S	N	F	E	I	D
Template Known Secondary structure					S	S	S	S															T	T	S																					T	T																									T	T		S	S	G	G	G	S	T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	S	D	G	P	L	G	K	T	T	Y	G	D	V	F	H	Q	N	E	V	E	Q	S	T	Y	N	F	E	Y	A	D	V	D	F	L	F	T	C	F	E	Q	Y	E	K	E	A	Q	Q	L	L	A	L	E	N	P	L	P	L	P	A	Y	E	R	I	L	K	A	A	H	S	F	N	L	L	D	A	R	K	A
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.							.	.
Template Conservation																	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.							.	.
Template Sequence		I	I	F	P	L	I	Q	F	G	E	E	V	S	G	K	.	.	.	.	.	.	.	.	.	K	Y	G	E	K	F	E	T	D	V	A	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	A	D	H	L	R	A	I	.	.	.	.	T	F	A	I	S	D	.	.	G	V
Template Known Secondary structure		T	T												T		.	.	.	.	.	.	.	.	.		T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.						T	.	.	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.							.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.										.	.	.	.	.	260	.	.	.	.	.	.	.																					.	.	270	.	.	.	.	.	.					.	.	.	280	.	.			.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	V	T	E	R	Q	R	Y	I	L	R	I	R	T	L	T	K	A	V	A	E	A	Y	Y	A	S	R	E	A	L	G	F	P	M	C	N	K
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence		I	P	S	N	E	G	R	G	Y	V	I	R	.	R	I	L	R	R	A	M	R	F	G	Y	K	L	G	I	E	N	P	F	L	Y	K	G	V	D
Template Known Secondary structure					S	S								.													T	T			S
Template Predicted Secondary structure														.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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