Job Description P00960 Confidence 86.41% Date Thu Jan 5 10:57:22 GMT 2012 Rank 38 Aligned Residues 110 % Identity 16% Template c1g5hA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:mitochondrial dna polymerase accessory subunit; PDBTitle: crystal structure of the accessory subunit of murine mitochondrial2 polymerase gamma Resolution 1.95 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.
Query SS confidence																																							.	.	.	.	.
Query Sequence		P	M	A	A	A	Y	V	Q	P	S	R	R	P	T	D	G	R	Y	G	E	N	P	N	R	L	Q	H	Y	Y	Q	F	Q	V	V	I	K	P	.	.	.	.	.	S	P	D	N	I	Q	E	L	Y	L	G	S	L	K	E	L	G	M	D	P	T	I	H	D	I	R	F	V	E	D	N	W	E	N	P	T	L	G
Query Conservation																																							.	.	.	.	.
Alig confidence																										.	.						.	.	.				.	.	.	.	.																							.	.											.	.	.	.
Template Conservation																										.	.						.	.	.																															.	.											.	.	.	.
Template Sequence		P	F	G	L	A	Q	I	G	V	C	F	H	P	V	S	T	R	V	G	E	K	T	E	A	.	.	S	L	V	W	F	.	.	.	T	P	T	R	T	S	S	Q	W	L	D	F	W	L	R	H	R	L	L	W	W	R	K	F	A	X	S	P	S	N	.	.	F	S	S	A	D	C	Q	D	E	L	.	.	.	.
Template Known Secondary structure																										.	.						.	.	.																							T	T		S	S	G	G	G	.	.									T	T	.	.	.	.
Template Predicted Secondary structure																										.	.						.	.	.																															.	.											.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.				.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.																						140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	W	G	L	G	W	E	V	W	L	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	E	V	T	Q	F	T	Y	F	Q	Q	V	G	G	L	E	C	K	P	V	T	G	E	I	T	Y	G	L	E	R	L	A	M	Y	I
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	G	R	K	G	S	K	L	Y	Y	S	F	P	W	G	K	E	P	I	E	T	L	W	N	L	G	D	Q	E	L	L	H	T	Y	P	G	N	V	S	T	I	Q	G	R	D	G	R	K	N	V	V	P	C	V	L	S	V	S	G	D	V	D	L	G	T	L	A	Y
Template Known Secondary structure		.	S											T	T													S							S	T	T		G	G	G	S					T	T
Template Predicted Secondary structure		.
Template SS confidence
			257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions