Job Description P16659 Confidence 100.00% Date Thu Jan 5 11:35:16 GMT 2012 Rank 45 Aligned Residues 333 % Identity 15% Template c3racA_ PDB info PDB header:ligase Chain: A: PDB Molecule:histidine-trna ligase; PDBTitle: crystal strucutre of histidine--trna ligase subunit from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446. Resolution 2.30 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	M	I	R	K	L	A	S	G	L	Y	T	W	L	P	T	G	V	R	V	L	K	K	V	E	N	I	V	R	E	E	M	N	N	A	G	A	I	E	V	S	M	P	V	V	Q	P	A	D	L	W	Q	E	S	G	R	W	E	Q	Y	G	P	E	L	L	R	F	V	D	R	G	E	R	P	F	V	L	G	P
Query Conservation
Alig confidence						.																																																					.
Template Conservation						.																																																					.
Template Sequence		R	G	F	A	.	D	R	P	P	G	M	Q	D	G	Y	P	D	F	A	K	R	R	R	A	V	E	T	R	L	L	S	F	V	E	D	A	G	Y	E	P	V	T	S	G	L	F	E	Y	V	D	T	L	L	R	A	R	S	.	P	E	S	S	R	D	W	I	R	L	F	D	G	G	G	D	A	V	A	L	R	P
Template Known Secondary structure						.				T	T						T	T																			T	T								S									T	T	S		.	T	T	S						B					S	S	S						S
Template Predicted Secondary structure						.																																																					.
Template SS confidence
		17	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		T	H	E	E	V	I	T	D	L	I	R	N	E	L	S	S	Y	K	Q	L	P	L	N	F	Y	Q	I	Q	T	K	F	R	D	E	V	R	P	R	F	G	V	M	R	S	R	E	F	L	M	K	D	A	Y	S	F	H	T	S	.	Q	E	S	L	Q	E	T	Y	D	A	M	Y	A	A	Y	S	K	I	F	S	R
Query Conservation																																																												.
Alig confidence															.																						.	.	.	.	.	.	.	.	.															.								.	.	.
Template Conservation															.																						.	.	.	.	.	.	.	.	.																							.	.	.
Template Sequence		E	M	T	P	S	I	A	R	M	A	A	P	R	.	V	A	A	G	R	T	P	I	R	W	C	Y	C	E	R	V	Y	R	R	T	A	.	.	.	.	.	.	.	.	.	A	E	S	T	Q	V	G	I	E	R	I	G	E	E	A	S	V	D	V	D	M	D	.	.	.	V	L	R	L	L	H	E	A	S	A	A
Template Known Secondary structure		S	S												.			T	T																		.	.	.	.	.	.	.	.	.												S	S										.	.	.
Template Predicted Secondary structure															.																						.	.	.	.	.	.	.	.	.																							.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.										.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150				.	.	.	.	.	.	.	.	.	160	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	L	D	F	R	A	V	Q	A	D	T	G	S	I	G	G	S	A	S	H	E	F	Q	V	L	A	Q	S	G	E	D	D	V	V	F	S	D	T	S	D	Y	A	A	N	I	E	L	A	E	A	I	A	P	K	E	P	R	A	A	A	T	Q	E	M	T	L	V	D	T	P	N	A	K	T	I	A	E	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	V	R	H	H	R	I	V	V	S	H	A	R	L	V	P	R	L	L	D	A	L	G	I	S	A	S	L	S	R	A	F	L	A	C	L	T	S	G	N	Y	V	Q	F	R	E	L	W	Q	L	H	A	A	K	D	V	D	L	L	A	N	L	L	T	W	S	P	A	E	R	D	A	A	K	R	S	R	E	A
Template Known Secondary structure			T			S								T	T									T	T																T														S			S									B				S	S		T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		E	Q	F	N	L	P	I	E	K	T	V	K	T	L	L	V	K	A	V	E	G	S	S	F	P	Q	V	A	L	L	V	R	G	D	H	E	L	N	E	V	K	A	E	K	L	P	Q	V	A	S	P	L	T	F	A	T	E	E	E	I	R	A	V	V	K	A	G	P	G	S	L	G	P	V	N	M	P	I	P	.
Query Conservation																																																																																	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	L	E	A	L	L	R	D	A	V	D	P	R	A	A	A	D	V	R	D	A	W	R	Y	L	C	R	L	A	E	A	L	H	D	S	G	L	A	S	D	V
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T		S																										T			T	T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		254	.																																					.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	I	D	R	T	V	A	A	M	S	D	F	A	A	G	A	N	I	D	G	K	H	Y	F	G	I	N	W	D	R	D	V	A	T	P	E	V	A	D	I	R	N	V	V	A	G	D	P	S	P	D	G	Q	G	R	L	L	I	K	R	G	I	E	V	G	H	I	F	Q	L	G	T	K	Y	S	E	A	L	K
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	F	D	L	A	L	H	R	E	L	D	Y	Y	T	G	L	V	F	E	M	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	G	V	G	A	P	I	A	Q	G	G	R	Y	D	E	L	L	A	Q	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T				S		T	T			S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		S	S		S							T	T	T	T	G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.																							320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	V	Q	G	E	D	G	R	N	Q	I	L	T	M	G	C	Y	G	I	G	V	T	R	V	V	A	A	A	I	E	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	A	G	A	P	A	V	G	F	A	F	E	V	E	R	V	M	A	V	L	E	A	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions