Job Description P16659 Confidence 100.00% Date Thu Jan 5 11:35:16 GMT 2012 Rank 24 Aligned Residues 374 % Identity 18% Template c3od1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase regulatory subunit; PDBTitle: the crystal structure of an atp phosphoribosyltransferase regulatory2 subunit/histidyl-trna synthetase from bacillus halodurans c Resolution 1.97 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	R	K	L	A	S	G	L	Y	T	W	L	P	T	G	V	R	V	L	K	K	V	E	N	I	V	R	E	E	M	N	N	A	G	A	I	E	V	S	M	P	V	V	Q	P	A	D	L	W	Q	E	S	G	R	W	E	Q	Y	G	P	E	L	L	R	F	V	D	R	G	E	R	P	F	V	L	G	P	T	H
Query Conservation
Alig confidence																																																								.	.
Template Conservation																																																								.	.
Template Sequence		F	X	F	E	K	P	F	G	X	R	D	T	L	P	E	W	Y	K	T	K	K	N	I	C	D	Q	X	T	E	E	I	N	L	W	G	Y	D	X	I	E	T	P	T	L	E	Y	Y	E	T	V	G	V	V	S	.	.	A	I	L	D	Q	Q	L	F	K	L	L	D	Q	Q	G	N	T	L	V	L	R	P	D	X
Template Known Secondary structure			T	T				T	T																										T	T								S				T	T	T					S	.	.	S	S		G	G	G	S						T	T	S							S		S
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	V	I	T	D	L	I	R	N	E	L	S	S	Y	K	Q	L	P	L	N	F	Y	Q	I	Q	T	K	F	R	D	E	V	R	P	R	F	G	V	M	R	S	R	E	F	L	M	K	D	A	Y	S	F	H	T	S	Q	E	S	L	Q	E	T	Y	D	A	M	Y	A	A	Y	S	K	I	F	S	R	M	G	L
Query Conservation
Alig confidence																.																		.	.	.	.			.	.																								.	.	.
Template Conservation																.																		.	.	.	.			.	.																								.	.	.
Template Sequence		T	A	P	I	A	R	L	V	A	S	S	L	K	D	.	R	A	Y	P	L	R	L	A	Y	Q	S	N	V	Y	R	A	Q	.	.	.	.	Q	G	.	.	K	P	A	E	F	E	Q	L	G	V	E	L	I	G	D	G	T	A	S	A	D	G	E	.	.	.	V	I	A	L	X	I	A	A	L	K	R	A	G	L
Template Known Secondary structure														S	S	.	S		S															.	.	.	.			.	.			S											S			S							.	.	.												T	T
Template Predicted Secondary structure																.																		.	.	.	.			.	.																								.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.					.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	R	A	V	Q	A	D	T	G	S	I	G	G	S	A	S	H	E	F	Q	V	L	A	Q	S	G	E	D	D	V	V	F	S	D	T	S	D	Y	A	A	N	I	E	L	A	E	A	I	A	P	K	E	P	R	A	A	A	T	Q	E	M	T	L	V	D	T	P	N	A	K	T	I	A	E	L	V	E	Q	F
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	E	F	K	V	A	I	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	Y	V	N	A	L	L	X	D	V	V	G	N	E	Q	R	A	D	R	L	R	R	F	L	Y	E	K	N	Y	V	G	Y	R	E	H	V	K	S	L
Template Known Secondary structure			S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											T	T												S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.																																.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	P	I	E	K	T	V	K	T	L	L	V	K	A	V	E	G	S	S	F	P	Q	V	A	L	L	V	R	G	D	H	E	L	N	E	V	K	A	E	K	L	P	Q	V	A	S	P	L	T	F	A	T	E	E	E	I	R	A	V	V	K	A	G	P	G	S	L	G	P	V	N	M	P	I	P	V	V	I	D
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	S	T	I	D	K	S	R	L	X	N	L	L	S	L	R	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	A	I	E	E	A	R	G	L	I	Q	T	E	K	G	K	T	A	L	A	E	X	T	K	L	Y	E	V	L	E	S	Y	G	A	S	E	Y	V	K	F	D
Template Known Secondary structure		S	S											G	G	G				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T			S																				T	T		G	G	G
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.																				.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	V	A	A	M	S	D	F	A	A	G	A	N	I	D	G	K	H	Y	F	G	I	N	W	D	R	D	V	A	T	P	E	V	A	D	I	R	N	V	V	A	G	D	P	S	P	D	G	Q	G	R	L	L	I	K	R	G	I	E	V	G	H	I	F	Q	L	G	T	K	Y	S	E	A	L	K	A	S	V	Q
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.													.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.													.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template Sequence		L	T	L	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	X	S	Y	Y	T	G	V	V	F	E	G	.	.	Y	G	N	R	L	G	V	P	L	C	S	G	.	.	.	.	.	.	.	.	.	.	G	R	Y	D	E	L	L	S	K	F	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S			S						.	.			T	T		S	S						.	.	.	.	.	.	.	.	.	.				T	T					T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.													.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template SS confidence
		266	.	.	.	270																					.	.	.	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.											.	.	.	.	.	300	.	.	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	D	G	R	N	Q	I	L	T	M	G	C	Y	G	I	G	V	T	R	V	V	A	A	A	I	E	Q	N	Y	D	E	R	G	I	V	W	P	D	A	I	A	P	F	Q	V	A	I	L	P	M	N	M	H	K	S	F	R	V	Q	E	L	A	E	K	L	Y	S	E	L	R	A	Q	G	I	E	V	L	L	D
Query Conservation
Alig confidence		.	.	.								.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Conservation		.	.	.								.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Sequence		.	.	.	H	R	P	A	Q	A	T	.	.	G	F	G	V	R	I	D	L	L	V	E	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	H	E	Q	T	C	I	L	F	.	.	.	.	S	N	E	R	R	F	E	A	I	E	L	A	R	K	K	R	A	N	G	E	A	V	V	L	Q
Template Known Secondary structure		.	.	.	T							.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.		G	G	G													T	T	T
Template Predicted Secondary structure		.	.	.								.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template SS confidence
					305	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.																	.	.	.	.	.	330	.	.	.	.					.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	K	E	R	P	G	V	M	F	A	D	M	E	L	I	G	I	P	H	T	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	A	G	V	T	D	V	D	A	X	S	S	N	Y	Q	D	V	I	Y	C	I
Template Known Secondary structure			G	G	G		S							T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.