Job Description P16659 Confidence 100.00% Date Thu Jan 5 11:35:16 GMT 2012 Rank 1 Aligned Residues 552 % Identity 46% Template c2j3mA_ PDB info PDB header:ligase Chain: A: PDB Molecule:prolyl-trna synthetase; PDBTitle: prolyl-trna synthetase from enterococcus faecalis complexed2 with atp, manganese and prolinol Resolution 2.3 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	T	S	Q	Y	L	L	S	T	L	K	E	T	P	A	D	A	E	V	I	S	H	Q	L	M	L	R	A	G	M	I	R	K	L	A	S	G	L	Y	T	W	L	P	T	G	V	R	V	L	K	K	V	E	N	I	V	R	E	E	M	N	N	A	G	A	I	E	V	S	M	P	V	V	Q	P	A	D	L	W
Query Conservation
Alig confidence													.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.
Template Sequence		M	K	Q	S	K	M	L	I	P	T	L	.	.	.	.	.	.	.	E	V	L	S	H	Q	I	L	L	R	A	G	Y	I	R	Q	V	A	A	G	I	Y	S	Y	L	P	L	A	N	R	V	L	E	K	L	K	T	I	M	R	E	E	F	E	K	I	D	A	V	E	M	L	M	P	A	L	L	P	A	E	L	W
Template Known Secondary structure			B	G	G	G	S						.	.	.	.	.	.	.											T	T	S						T	T																									T	T	T								S
Template Predicted Secondary structure													.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.								.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	S	G	R	W	E	Q	Y	G	P	E	L	L	R	F	V	D	R	G	E	R	P	F	V	L	G	P	T	H	E	E	V	I	T	D	L	I	R	N	E	L	S	S	Y	K	Q	L	P	L	N	F	Y	Q	I	Q	T	K	F	R	D	E	V	R	P	R	F	G	V	M	R	S	R	E	F	L	M	K	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	S	G	R	Y	E	T	Y	G	P	N	L	Y	R	L	K	D	R	N	D	R	D	Y	I	L	G	P	T	H	E	E	T	F	T	E	L	I	R	D	E	I	N	S	Y	K	R	L	P	L	N	L	Y	Q	I	Q	T	K	Y	R	D	E	K	R	S	R	S	G	L	L	R	G	R	E	F	I	M	K	D	G
Template Known Secondary structure					S					S		T	T	S						T	T								S																B	G	G	G																S				S	G	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	F	H	T	S	Q	E	S	L	Q	E	T	Y	D	A	M	Y	A	A	Y	S	K	I	F	S	R	M	G	L	D	F	R	A	V	Q	A	D	T	G	S	I	G	G	S	A	S	H	E	F	Q	V	L	A	Q	S	G	E	D	D	V	V	F	S	D	T	S	D	Y	A	A	N	I	E	L	A	E	A	I	A
Query Conservation
Alig confidence																																								.	.	.	.
Template Conservation																																								.	.	.	.
Template Sequence		Y	S	F	H	A	D	E	A	S	L	D	Q	S	Y	R	D	Y	E	K	A	Y	S	R	I	F	E	R	C	G	L	E	F	R	A	I	I	G	D	.	.	.	.	G	G	K	D	S	K	E	F	M	A	I	S	E	I	G	E	D	T	I	C	Y	S	T	E	S	D	Y	A	A	N	L	E	M	A	T	S	L	Y
Template Known Secondary structure						S	S																						T	T										.	.	.	.													T	T		S							S	S	S	S					T	T	T
Template Predicted Secondary structure																																								.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.					.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	E	P	R	A	A	A	T	Q	E	M	T	L	V	D	T	P	N	A	K	T	I	A	E	L	V	E	Q	F	N	L	P	I	E	K	T	V	K	T	L	L	V	K	A	V	E	G	S	S	F	P	Q	V	A	L	L	V	R	G	D	H	E	L	N	E	V	K	A	E	K	L	P	Q	V	A	S	P	L	T
Query Conservation
Alig confidence																																															.	.	.	.																												.
Template Conservation																																															.	.	.	.																												.
Template Sequence		T	P	K	K	S	H	E	T	Q	L	D	L	E	K	I	A	T	P	E	V	G	T	I	A	E	V	A	N	F	F	E	V	E	P	Q	R	I	I	K	S	V	L	F	I	A	.	.	.	.	D	E	E	P	V	M	V	L	V	R	G	D	H	D	V	N	D	V	K	L	K	N	F	L	G	A	D	.	F	L	D
Template Known Secondary structure																			T	T			S									T			T	T	T	B									.	.	.	.	T	T									T	T			B										T		S	.
Template Predicted Secondary structure																																															.	.	.	.																												.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		F	A	T	E	E	E	I	R	A	V	V	K	A	G	P	G	S	L	G	P	V	N	M	P	.	.	I	P	V	V	I	D	R	T	V	A	A	M	S	D	F	A	A	G	A	N	I	D	G	K	H	Y	F	G	I	N	W	D	R	D	V	A	T	P	E	V	A	D	I	R	N	V	V	A	G	D	P	S	P	D
Query Conservation																										.	.
Alig confidence																										.	.
Template Conservation
Template Sequence		E	A	T	E	E	D	A	R	R	V	L	G	A	G	F	G	S	I	G	P	V	N	V	S	E	D	V	K	I	Y	A	D	L	A	V	Q	D	L	A	N	A	I	V	G	A	N	E	D	G	Y	H	L	T	N	V	N	P	D	R	D	F	Q	P	I	S	Y	E	D	L	R	F	V	Q	E	G	D	P	S	P	D
Template Known Secondary structure													S	S		G	G	G			S	S	S			T	T	S						G	G	G	G	G			S						S	S	T	T								B	T	T	T	B			S						B				T	T		B		T	T
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	G	R	L	L	I	K	R	G	I	E	V	G	H	I	F	Q	L	G	T	K	Y	S	E	A	L	K	A	S	V	Q	G	E	D	G	R	N	Q	I	L	T	M	G	C	Y	G	I	G	V	T	R	V	V	A	A	A	I	E	Q	N	Y	D	E	R	G	I	V	W	P	D	A	I	A	P	F	Q	V	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	N	G	V	L	A	F	T	K	G	I	E	I	G	H	I	F	K	L	G	T	R	Y	S	D	A	M	G	A	T	V	L	D	E	N	G	R	E	K	S	V	I	M	G	C	Y	G	I	G	V	S	R	L	L	S	A	I	V	E	Q	N	A	D	E	R	G	I	N	W	P	T	G	I	A	P	F	D	L	H	V
Template Known Secondary structure		S	S	S	B																	T							T						T	T	S																											B	T	T	B	S				T	T	T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	M	N	M	H	K	S	F	R	V	Q	E	L	A	E	K	L	Y	S	E	L	R	A	Q	G	I	E	V	L	L	D	D	R	K	E	R	P	G	V	M	F	A	D	M	E	L	I	G	I	P	H	T	I	V	L	G	D	R	N	L	D	N	D	D	I	E	Y	K	Y	R	R	N	G	E	K	Q	L	I	K
Query Conservation
Alig confidence								.																																																								.
Template Conservation								.																																																								.
Template Sequence		V	Q	M	N	V	K	.	D	E	Y	Q	T	K	L	S	Q	E	V	E	A	M	M	T	E	A	G	Y	E	V	L	V	D	D	R	N	E	R	A	G	V	K	F	A	D	A	D	L	I	G	C	P	I	R	I	T	V	G	K	K	A	V	D	.	G	V	V	E	V	K	I	K	R	T	G	E	M	L	E	V	R
Template Known Secondary structure				S		T	T	.																		T	T								S	S														T		S						S	T	T	G	G	G	.	T							T	T	T	T
Template Predicted Secondary structure								.																																																								.
Template SS confidence
		476	.	.	.	480	.		.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.		.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
		559	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	D	I	V	E	Y	L	V	K	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	E	L	E	S	T	L	S	I	L	M
Template Known Secondary structure		G	G	G
Template Predicted Secondary structure
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.