Job Description P27249 Confidence 56.11% Date Thu Jan 5 11:43:29 GMT 2012 Rank 135 Aligned Residues 92 % Identity 20% Template c3nybA_ PDB info PDB header:transferase/rna binding protein Chain: A: PDB Molecule:poly(a) rna polymerase protein 2; PDBTitle: structure and function of the polymerase core of tramp, a rna2 surveillance complex Resolution 2.70 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	D	T	F	Q	R	W	L	G	D	A	F	D	N	G	I	S	A	E	Q	L	I	E	A	R	T	E	F	I	D	Q	L	L	Q	R	L	W	I	E	A	G	F	S	Q	I	A	D	L	A	L	V	A	V	G	G	Y	G	R	G	E	L	H	P	L	S	D	V	D	L	L	I	L	S	R	K	K	L	P	D
Query Conservation
Alig confidence																																			.													.	.	.	.																														.
Template Conservation																																			.													.	.	.	.																														.
Template Sequence		I	S	D	W	L	T	F	E	I	K	D	F	V	A	Y	I	S	P	S	R	E	E	I	E	I	R	N	Q	T	I	S	T	I	.	R	E	A	V	K	Q	L	W	P	D	A	D	.	.	.	.	L	H	V	F	G	S	Y	S	T	D	L	Y	L	P	G	S	D	I	D	C	V	V	T	S	E	L	G	G	K	.
Template Known Secondary structure																	T	S																	.						T	T		T	T			.	.	.	.					S	T	T	T	T	T				T	T	S								S	S			G	G	.
Template Predicted Secondary structure																																			.													.	.	.	.																														.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	A	Q	K	V	G	E	L	L	T	L	L	W	D	V	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	R	N	N	L	Y	S	L	A	S	H	L	K	K	K	N	L
Template Known Secondary structure		G															T	T	S
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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