Job Description P27249 Confidence 95.84% Date Thu Jan 5 11:43:29 GMT 2012 Rank 68 Aligned Residues 147 % Identity 10% Template c3ljvA_ PDB info PDB header:transcription Chain: A: PDB Molecule:mmoq response regulator; PDBTitle: crystal structure of mmoq response regulator (fragment 29-302) from2 methylococcus capsulatus str. bath, northeast structural genomics3 consortium target mcr175m Resolution 2.60 Å

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		390	.	.	.	.	.	.	.	.	.	400	.	.								.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.			.	430	.	.	.	.	.	.	.	.	.	440	.	.			.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																											.	.															.	.
Query SS confidence															.	.	.	.	.	.	.																											.	.															.	.
Query Sequence		T	G	I	Y	S	T	T	L	R	Q	L	R	H	.	.	.	.	.	.	.	A	R	R	H	L	Q	Q	P	L	C	N	I	P	E	A	R	K	L	F	L	S	I	L	R	H	P	.	.	G	A	V	R	R	G	L	L	P	M	H	R	H	S	.	.	V	L	G	A	Y	M	P	Q	W	S	H	I	V	G	Q	M
Query Conservation															.	.	.	.	.	.	.																											.	.															.	.
Alig confidence															.	.	.	.	.	.	.																											.	.															.	.
Template Conservation
Template Sequence		L	P	T	A	S	R	T	A	A	A	I	L	N	L	A	Q	R	E	D	V	T	A	E	A	L	A	Q	L	I	Q	T	D	P	A	L	T	G	R	I	L	R	F	A	N	A	P	A	R	R	P	V	A	S	V	I	D	A	I	D	L	V	G	L	P	A	V	R	Q	F	A	L	S	L	S	L	I	D	A	H	R
Template Known Secondary structure																	T	S	S	S											T	T														S								S																		T	T					T	S	S
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		459	460	.	.	.	.	.	.	.			.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.																.	520	.
Predicted Secondary structure											.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	F	D	L	F	H	A	Y	T	.	.	V	D	E	H	T	I	R	V	M	L	K	L	E	S	F	A	S	E	E	T	R	Q	R	H	P	L	C	V	D	V	W	P	R	L	P	S	T	E	L	I	F	I	A	A	L	F	H	D	I	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	G
Query Conservation											.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	R	C	E	A	F	D	Y	A	A	Y	W	Q	K	S	L	A	R	A	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	S	I	T	A	Q	A	V	A	P	K	E	A	F	T	L	G	L	L	A	D	V	G	R	L	A	L	A	T	A	W	P	E	E	Y	S	E	C	L	R	K	A
Template Known Secondary structure		T	T			T	T	S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	G	G	G														T	T																	T	T	S	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.																.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		522	.	.	.	.	.	.	.	530											.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.
Query Sequence		G	D	H	S	I	L	G	A	Q	.	.	.	.	.	.	.	.	.	.	D	V	V	H	F	A	E	L	H	G	L	N	S	R	E	T	Q	L	V	A	W
Query Conservation											.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	E	A	L	I	A	L	E	R	E	R	F	A	T	D	H	D	E	L	T	R	X	L	L	T	D	W	G	F	P	Q	V	F	I	D	A	L	Q	L
Template Known Secondary structure			T												S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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