Job Description P27249 Confidence 97.02% Date Thu Jan 5 11:43:29 GMT 2012 Rank 47 Aligned Residues 160 % Identity 14% Template c3hc1A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized hdod domain protein; PDBTitle: crystal structure of hdod domain protein with unknown function2 (np_953345.1) from geobacter sulfurreducens at 1.90 a resolution Resolution 1.90 Å

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		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.							.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.									.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																														.	.	.	.	.	.																											.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.																											.	.	.	.	.	.	.	.
Query Sequence		A	I	L	R	M	F	Y	T	M	V	H	N	S	A	I	T	G	I	Y	S	T	T	L	R	Q	L	R	H	.	.	.	.	.	.	A	R	R	H	L	Q	Q	P	L	C	N	I	P	E	A	R	K	L	F	L	S	I	L	R	H	P	.	.	.	.	.	.	.	.	G	A	V	R	R	G	L	L	P	M	H	R
Query Conservation																														.	.	.	.	.	.																											.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	T	L	A	R	E	F	X	S	G	V	D	E	L	P	T	V	P	D	I	V	L	R	I	A	G	K	L	N	D	P	D	V	A	I	D	E	V	A	D	L	L	L	Q	D	Q	V	L	T	A	R	V	V	H	L	A	N	S	P	L	Y	S	A	A	R	P	I	S	S	I	R	D	A	V	I	Y	L	G	L
Template Known Secondary structure												T		S	S															T	T		T	T											T	T														S					T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		H	S	V	L	G	A	Y	M	P	Q	W	S	H	I	V	G	Q	M	Q	F	D	L	F	H	A	Y	T	V	D	E	H	T	I	R	V	M	L	K	L	E	S	F	A	S	E	E	T	R	Q	R	H	P	L	C	V	D	V	W	P	R	L	P	S	T	E	L	I	F	I	A	A	L	F	H	D	I	A	K	.	.
Query Conservation																																																																																.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	L	R	E	A	I	F	T	C	A	I	V	D	L	F	K	T	G	K	G	P	L	N	R	S	T	L	W	A	H	S	L	G	V	A	R	I	A	K	L	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	T	G	F	L	N	P	V	N	V	Y	V	A	G	L	L	H	D	V	G	E	V	F
Template Known Secondary structure																			S				S	S																					.	.	.	.	.	.	.	.	.	.	.	.	.			T	T		S											T	T	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.														.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
																															519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	G	G	D	H	S	I	L	G	A	Q	D	V	V	H	F	A	E	L	H	G	L	N	S	R	E	T	Q	L	V	A	W
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																																															.	.	.	.
Template Sequence		I	N	F	F	R	G	K	E	F	S	Q	V	V	T	L	V	D	E	E	K	I	T	F	G	Q	A	E	E	R	L	F	G	T	S	H	C	E	V	G	F	A	L	A	K	R	.	.	.	.	W	S	L	N	E	F	I	C	D	T	I	L	Y
Template Known Secondary structure						S																											S	S													.	.	.	.	T	T
Template Predicted Secondary structure																																															.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions