Job Description P27249 Confidence 100.00% Date Thu Jan 5 11:43:29 GMT 2012 Rank 3 Aligned Residues 237 % Identity 12% Template c3aqnA_ PDB info PDB header:transferase Chain: A: PDB Molecule:poly(a) polymerase; PDBTitle: complex structure of bacterial protein (apo form ii) Resolution 3.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		356	.	.	.	360	.	.	.	.	.	.			.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		L	R	G	T	L	I	D	L	R	D	E	.	.	T	L	F	M	R	Q	P	E	A	I	L	R	M	F	Y	T	M	V	H	N	S	A	I	T	G	I	Y	S	T	T	L	R	Q	L	R	H	A	R	R	H	L	Q	Q	P	L	C	N	I	P	E	A	R	K	L	F	L	S	I	L	R	H	P	G	A	V	R	R
Query Conservation													.	.
Alig confidence													.	.																							.	.																								.	.																.
Template Conservation																																					.	.																								.	.																.
Template Sequence		L	K	D	G	V	I	R	L	I	G	N	P	E	T	R	Y	R	E	D	P	V	R	M	L	R	A	V	R	F	A	A	K	L	G	M	.	.	R	I	S	P	E	T	A	E	P	I	P	R	L	A	T	L	L	N	D	I	P	P	A	.	.	H	L	F	E	E	S	L	K	L	L	Q	A	G	Y	G	.	Y	E
Template Known Secondary structure					T				B	S	S										T	T												S	S		.	.								T						G	G	G	G	G	G	S				.	.											S	S	S			.
Template Predicted Secondary structure																																					.	.																								.	.																.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210			.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	L	P	M	H	R	H	S	V	L	G	A	Y	M	P	Q	W	S	H	I	V	G	Q	M	Q	F	D	L	F	H	A	Y	T	V	D	E	H	T	I	R	V	M	L	K	L	E	S	F	A	S	E	E	T	R	Q	R	H	P	L	C	V	D	V	W	P	R	L	P	S	T	E	L	I	F	I	A	A	L	F
Query Conservation
Alig confidence																																			.														.	.																								.	.	.	.
Template Conservation																																			.														.	.																								.	.	.	.
Template Sequence		T	Y	K	L	L	C	E	Y	H	L	F	Q	P	L	F	P	T	I	T	R	Y	F	T	E	N	G	D	S	P	M	E	R	I	.	I	E	Q	V	L	K	N	T	D	T	R	I	H	.	.	N	D	M	R	V	N	P	A	F	L	F	A	A	M	F	W	Y	P	L	L	E	T	A	.	.	.	.	Q	K	I	A
Template Known Secondary structure									T	T											T	T			T	T	S								.														.	.	T	T													T									.	.	.	.
Template Predicted Secondary structure																																			.														.	.																								.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.					320	.	.	.
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	I	A	K	G	R	G	G	D	H	S	I	L	G	A	Q	D	V	V	H	F	A	E	L	H	G	L	N	S	R	E	T	Q	L	V	A	W	L	V	R	Q	H	L	L	M	S	V	T	A	Q	R	R	D	I	Q	D	P	E	V	I	K	Q	F	A	E	E	V	Q	T	E	N	R	L	R	Y	L	V	C	L
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.
Template Sequence		Q	E	S	G	L	T	Y	H	D	A	F	A	L	A	M	N	D	V	L	D	E	A	C	R	S	L	A	I	P	K	R	L	T	T	L	T	R	D	I	W	Q	L	Q	L	R	M	S	R	R	Q	G	K	R	.	.	.	.	.	.	.	A	W	K	L	L	E	H	P	K	F	R	A	A	Y	D	L	L	A	L	R
Template Known Secondary structure				S																							S																				T	T	S				T	T	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.								.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	A	D	I	C	A	T	N	E	T	L	W	N	S	W	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	V	E	R	N	A	E	L	Q	R	L	V	K	W	W	G	E
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions