Phyre 2 alignment of P27242 with c3q3hA

Job Description P27242
Confidence 39.79% Date Thu Jan 5 11:43:22 GMT 2012

Rank 76 Aligned Residues 287

% Identity 9% Template c3q3hA_

PDB info PDB header:transferase Chain: A: PDB Molecule:hmw1c-like glycosyltransferase; PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc

Resolution 2.25 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence	H	K	K	K	R	F	Y	I	N	K	I	K	I	N	F	L	S	F	L	F	R	N	K	I	N	N	Q	I	T	D	P	A	Q	V	K	S	C	L	I	I	H	D	N	N	K	L	G	D	L	.	.	.	I	V	L	S	S	I	Y	R	E	L	Y	S	K	G	V	K	I	T	L	L	T	N	R	K	G	G	E	F
Query Conservation																																																		.	.	.
Alig confidence																																											.							.	.	.
Template Conservation																																											.
Template Sequence	H	D	V	K	R	A	L	N	H	V	I	R	R	H	I	E	S	E	Y	G	W	K	D	R	D	V	A	H	I	G	Y	R	N	N	K	P	V	M	V	V	L	L	.	E	H	F	H	S	A	H	S	I	Y	R	T	H	S	T	S	M	I	A	A	R	E	H	F	Y	L	I	G	L	G	S	P	S	V	D	Q	A
Template Known Secondary structure	T																	T	T								S	S				B	T	T	B								.	S	S			T	T	S													G	G	G	T									T	T	S
Template Predicted Secondary structure																																											.
Template SS confidence
	229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.							.	.	.	.
Predicted Secondary structure																					.																																																		.	.	.	.	.	.
Query SS confidence																					.																																																		.	.	.	.	.	.
Query Sequence	L	S	N	N	K	N	I	F	E	F	C	I	K	E	S	T	G	F	L	E	.	M	L	T	L	C	K	H	L	R	D	L	Q	F	D	I	V	L	D	P	F	E	T	M	P	S	F	K	H	S	L	I	L	S	S	L	K	D	S	Y	I	L	G	F	D	H	W	Y	K	R	.	.	.	.	.	.	Y	Y	S	F
Query Conservation																					.																																																		.	.	.	.	.	.
Alig confidence					.	.															.																																			.															.	.	.	.	.	.
Template Conservation					.	.																																																		.
Template Sequence	G	Q	E	V	.	.	F	D	E	F	H	L	V	A	G	D	N	M	K	Q	K	L	E	F	I	R	S	V	C	E	S	N	G	A	A	I	F	Y	M	P	S	I	G	M	D	M	T	T	I	F	A	S	N	T	R	.	L	A	P	I	Q	A	I	A	L	G	H	P	A	T	T	H	S	D	F	I	E	Y	V	I
Template Known Secondary structure			T	T	.	.	S	S								S	S																T		S					S			S	S	S							T	T	S		.		S	S							S	S		S					T	T
Template Predicted Secondary structure					.	.																																																		.
Template SS confidence
	308	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

	157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	H	P	H	D	E	C	L	K	E	H	M	S	T	R	A	I	E	I	L	K	H	I	Y	G	E	G	K	F	S	T	N	Y	D	L	H	L	P	V	D	V	E	D	K	I	K	E	F	I	G	D	T	R	I	V	I	I	N	P	L	G	A	K	K	I	C	R	L	T	F	E	Q	I	K	V	I	Y	Q	E	V
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.														.									.	.
Template Conservation																																								.	.	.	.	.	.	.	.														.									.	.
Template Sequence	V	E	D	D	Y	V	G	S	E	E	C	F	S	E	T	L	L	R	L	P	K	D	A	L	P	Y	V	P	S	A	L	A	P	E	K	V	D	Y	L	.	.	.	.	.	.	.	.	L	R	E	N	P	E	V	V	N	I	G	I	A	.	S	T	T	M	K	L	N	P	.	.	Y	F	L	E	A	L	K	A	I
Template Known Secondary structure			G	G	G		S		G	G	G		S	S							T	T	S	S						T	T			S	S					.	.	.	.	.	.	.	.			S			S								.			S	T	T				.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.														.									.	.
Template SS confidence
	385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.									.	.	.	.	.	.	430	.	.	.	.	.	.		.	.	.	440	.	.	.	.			.	.	.	.	.	450	.	.	.

	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260												.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.					.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query Sequence	K	T	H	F	E	N	Y	R	I	I	F	T	G	L	P	Q	D	L	L	T	I	P	I	L	.	.	.	.	.	.	.	.	.	.	.	E	I	E	T	L	P	F	D	E	F	I	Y	T	V	A	L	T	K	Y	S	D	F	V	I	.	.	.	.	S	V	D	T	A	L	V	H	I	A	A	A	Y	H	K	P	T
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence	R	D	R	A	K	V	K	V	H	F	H	F	A	L	G	Q	S	N	G	I	T	H	P	Y	V	E	R	F	I	K	S	Y	L	G	D	S	A	T	A	H	P	H	S	P	Y	H	Q	Y	L	R	I	L	H	N	C	D	M	M	V	N	P	F	P	F	G	N	T	N	G	I	I	D	M	V	T	L	G	L	V	G
Template Known Secondary structure					S	S										T			T	T	T													G	G	G																		T		S						S	S	S			S									T	T
Template Predicted Secondary structure
Template SS confidence
	454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.

	302	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	A	F	Y	P	N	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	C	K	T	G	A	E
Template Known Secondary structure						S	S
Template Predicted Secondary structure
Template SS confidence
	534	.	.	.	.	.	540

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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