Phyre 2 alignment of P27242 with c2xmpB

Job Description P27242
Confidence 77.92% Date Thu Jan 5 11:43:22 GMT 2012

Rank 43 Aligned Residues 250

% Identity 18% Template c2xmpB_

PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	36	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.											.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure															.																													.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																													.	.	.	.	.	.	.	.	.	.
Query Sequence	D	P	A	Q	V	K	S	C	L	I	I	H	D	N	.	N	K	L	G	D	L	I	V	L	S	S	I	Y	R	E	L	Y	S	K	G	V	K	I	T	L	L	T	N	.	.	.	.	.	.	.	.	.	.	R	K	G	G	E	F	L	S	N	N	K	N	I	F	E	F	C	I	K	E	S	T	G	F	L	E	M
Query Conservation															.																													.	.	.	.	.	.	.	.	.	.
Alig confidence															.																													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	E	K	L	K	G	R	S	F	V	H	V	N	S	T	S	F	G	G	G	V	A	E	I	L	H	S	L	V	P	L	L	R	S	I	G	I	E	A	R	W	F	V	I	E	G	P	T	E	F	F	N	V	T	K	T	F	H	N	A	L	Q	G	N	E	S	L	K	L	T	E	E	M	K	E	L	Y	L	N	V	N
Template Known Secondary structure	T	T	T	T	T								S		S	S	S	S															T	T	T																										T	S		T	T
Template Predicted Secondary structure
Template SS confidence
	36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.

	105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.																										.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	L	T	L	C	K	H	L	R	D	L	Q	F	D	I	V	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	E	T	M	P	S	F	K	H	S	L	I	L	S	S	L	K	D	S	Y	I	L	G	F	D	H	W	Y	K	R	Y	Y	S	F	Y	H	P
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	E	N	S	K	F	I	D	L	S	S	F	D	Y	V	L	V	H	D	P	Q	P	A	A	L	I	E	F	Y	E	K	K	S	P	W	L	W	R	C	H	I	D	L	S	S	P	N	R	E	F	W	E	F	L	R	R	F	V	E	K	Y	D	R	Y	I	F	H	L	P	E	Y	V	Q	P	E	L	D	R	N	K
Template Known Secondary structure			T	T	T	T	S		S	T	T	S	S						S	S	T	T	G	G	G	G	G	S	S				S								S			S	S														T	T	S	S					S	S	T	T	S			T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
	116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence	H	D	E	C	L	K	E	H	M	S	T	R	A	I	E	I	L	K	H	I	Y	G	E	G	K	F	S	T	N	Y	D	L	H	L	P	V	D	V	E	D	K	I	K	E	F	.	.	I	G	D	T	R	I	V	I	I	N	P	L	G	A	K	K	I	C	R	L	T	F	E	Q	I	K	V	I	Y	Q	E	V	K
Query Conservation																																														.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																						.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.
Template Sequence	A	V	I	M	P	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	P	L	S	E	K	N	V	E	L	K	Q	T	E	I	L	R	I	L	E	R	F	D	V	D	P	E	K	P	I	I	T	Q	V	S	R	F	D	P	W	K	G	I	F	.	.	D	V	I	E	I	Y	R	K	V	K
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B		T	T	S	T	T	T	S														T	T			T	T	S										S	T	T	S				.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.
Template SS confidence
	196	.	.	.	200	.	.																	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.

	238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.										.	.	.	.	.	.	260	.	.	.								.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.						290	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.																											.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.																											.	.	.	.	.
Query Sequence	T	H	F	E	N	Y	R	I	I	F	T	G	L	P	Q	D	.	.	.	.	.	.	.	.	.	L	L	T	I	P	I	L	E	I	E	.	.	.	.	.	.	.	T	L	P	F	D	E	F	I	Y	T	V	A	L	T	K	Y	S	D	F	V	I	S	V	D	T	A	.	.	.	.	.	L	V	H	I	A	A	A
Query Conservation																	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.																											.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.																											.	.	.	.	.
Template Conservation
Template Sequence	E	K	I	P	G	V	Q	L	L	L	V	G	V	M	A	H	D	D	P	E	G	W	I	Y	F	E	K	T	L	R	K	I	G	E	D	Y	D	V	K	V	L	T	N	L	I	G	V	H	A	R	E	V	N	A	F	Q	R	A	S	D	V	I	L	Q	M	S	I	R	A	G	F	G	L	T	V	T	E	A	M	W
Template Known Secondary structure				T	T											T	T																T	T		T	T						G	G	G	T												T		S							S	S		S	S
Template Predicted Secondary structure
Template SS confidence
	258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

	297	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	H	K	P	T	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	K	G	K	P	V	I	G
Template Known Secondary structure	T	T
Template Predicted Secondary structure
Template SS confidence
	338	.	340	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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