Job Description P27242 Confidence 97.28% Date Thu Jan 5 11:43:22 GMT 2012 Rank 12 Aligned Residues 250 % Identity 12% Template c2xcuC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp Resolution 2.42 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		P	A	Q	V	K	S	C	L	I	I	H	D	N	N	K	L	G	D	L	I	V	L	S	S	I	Y	R	E	L	Y	S	.	K	G	V	K	I	T	L	L	T	N	R	K	G	G	E	F	L	S	N	N	K	N	I	F	E	F	C	I	K	E	S	T	G	F	L	E	M	L	T	L	C	K	H	L	R	D	L	Q
Query Conservation																																	.
Alig confidence																.																	.																																													.	.	.
Template Conservation																.																																																														.	.	.
Template Sequence		L	K	N	C	K	G	A	L	W	V	H	T	A	S	.	I	G	E	F	N	T	F	L	P	I	L	K	E	L	K	R	E	H	R	I	L	L	T	Y	F	S	P	R	A	R	E	Y	L	K	T	K	S	D	F	Y	D	C	L	H	P	L	P	L	D	N	P	F	S	V	K	R	F	E	E	L	S	.	.	.	K
Template Known Secondary structure		G	G	G	G	T	T							S	S	.															T	T	T	S							S		T	T							T	T	G	G	G		S								S	S												.	.	.
Template Predicted Secondary structure																.																																																														.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.				90
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	I	V	L	D	P	F	E	T	M	P	S	F	K	H	S	L	I	L	S	S	L	K	D	S	Y	I	L	G	F	D	H	W	Y	K	R	Y	Y	S	F	Y	H	P	H	D	E	C	L	K	E	H	M	S	T	R	A	I	E	I	L	K	H	I	Y	G	E	G	K	F	S	T	N	Y	D	L	H	L	P	V
Query Conservation
Alig confidence														.	.	.	.																																																			.	.	.	.	.
Template Conservation														.	.	.	.																																																			.	.	.	.	.
Template Sequence		P	K	A	L	I	V	V	E	R	E	F	W	.	.	.	.	P	S	L	I	I	F	T	K	V	P	K	I	L	V	N	A	Y	A	K	G	S	L	I	E	K	I	L	S	K	K	F	D	L	I	I	M	R	T	Q	E	D	V	E	K	F	K	T	F	G	A	.	.	.	.	.	K	R	V	F	S	C	G	N	L
Template Known Secondary structure			S						S					.	.	.	.									S																			G	G	G		S					S	S									T	T	T		.	.	.	.	.	S	S							G
Template Predicted Secondary structure														.	.	.	.																																																			.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.						.	.	.	.	.	.	.	160	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		D	V	E	D	K	I	K	E	F	I	G	D	T	R	I	V	I	I	N	P	L	G	A	K	K	I	C	R	L	T	F	E	Q	I	K	V	I	Y	Q	E	V	K	T	H	F	E	N	Y	R	I	I	F	T	G	L	P	Q	D	L	L	T	I	P	I	L	E	I	E	T	L	P	F	D	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																												.	.	.	.																																												.	.	.	.	.	.	.
Template Conservation																												.	.	.	.
Template Sequence		K	F	I	C	Q	K	G	K	G	I	K	L	K	G	E	F	I	V	A	G	S	I	H	T	G	E	.	.	.	.	V	E	I	I	L	K	A	F	K	E	I	K	K	T	Y	S	S	L	K	L	I	L	V	P	R	H	I	E	N	A	K	I	F	E	K	K	A	R	D	F	G	F	K	T	S	F	F	E	N	L
Template Known Secondary structure		G	G											S	S										G	G	G	.	.	.	.													T	T		T	T								S	S	G	G	G											T	T						T	T
Template Predicted Secondary structure																												.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
										269	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.						.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.															.					.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.															.					.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	E	F	I	Y	T	V	A	L	T	K	Y	S	D	F	.	V	I	S	V	.	.	.	.	.	D	T	A	L	V	H	I	A	A	A	Y	H	K	P	T	L	A
Query Conservation		.	.	.	.	.	.	.	.															.					.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.															.					.	.	.	.	.
Template Conservation
Template Sequence		E	G	D	V	I	L	V	D	R	F	G	I	L	K	E	L	Y	P	V	G	K	I	A	I	V	G	G	T	F	V	N	I	G	G	H	N	L	L	E	P	T	C	W	G	I	P	V	I	Y
Template Known Secondary structure			S	S							T	T						G	G	G								S	S	S	S	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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