Job Description P25552 Confidence 97.55% Date Thu Jan 5 11:42:09 GMT 2012 Rank 35 Aligned Residues 143 % Identity 18% Template c3qb0C_ PDB info PDB header:structural protein Chain: C: PDB Molecule:actin-related protein 4; PDBTitle: crystal structure of actin-related protein arp4 from s. cerevisiae2 complexed with atp Resolution 3.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.																														.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		A	I	D	L	G	S	N	S	F	H	M	L	V	V	R	E	V	A	G	S	I	Q	T	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	K	R	K	V	R	L	A	A	G	L	N	S	E	N	A	L	S	N	.	E	A	M	E	R
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence												.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.								.
Template Conservation												.	.																																																	.	.	.	.	.	.	.
Template Sequence		V	I	D	P	G	S	Y	T	T	N	.	.	I	G	Y	S	G	S	D	F	P	Q	S	I	L	P	S	V	Y	G	K	Y	T	A	D	E	G	N	K	K	I	F	S	E	Q	S	I	G	I	P	R	K	D	Y	E	L	K	P	I	I	.	.	.	.	.	.	.	E	N	G	L	V	I	D	W	D	T	A	Q	E
Template Known Secondary structure							S	S				.	.				T	T		S	S		S					S						S	S		S	S							T	T	G	G	G	S			T	T						S		.	.	.	.	.	.	.		T	T			S
Template Predicted Secondary structure												.	.																																																	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.								.	.	.	.	80	.	.	.	.	.	.	.	.
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																											.																								.
Query SS confidence																											.																								.
Query Sequence		G	W	Q	C	L	R	L	F	A	E	R	L	Q	D	I	P	P	S	Q	I	R	V	V	A	T	.	A	T	L	R	L	A	V	N	A	G	D	F	I	A	K	A	Q	E	I	L	G	C	P	.	V	Q	V	I	S	G	E	E	E	A	R	L	I	Y	Q	G	V	A	H	T	T	G	G	A	D	Q	R	L	V	V
Query Conservation																											.																								.
Alig confidence							.	.																			.																								.															.	.	.	.	.	.	.	.
Template Conservation							.	.																																																										.	.	.	.	.	.	.	.
Template Sequence		Q	W	Q	W	A	.	.	L	Q	N	E	L	Y	L	N	S	N	S	G	I	P	A	L	L	T	E	P	V	W	N	S	T	E	N	R	K	K	S	L	E	V	L	L	E	G	M	Q	F	E	A	C	Y	L	A	P	T	S	T	C	V	S	F	A	A	.	.	.	.	.	.	.	.	G	R	P	N	C	L	V	V
Template Known Secondary structure							.	.				T	S			S			T	T									T	T															T	T	S			S																.	.	.	.	.	.	.	.	T		S	S
Template Predicted Secondary structure							.	.																																																										.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150									.	.	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		D	I	G	G	A	S	T	E	L	V	T	G	T	G	A	Q	T	T	S	.	.	L	F	S	L	S	M	G	C	V	T	W	L	E	R	Y
Query Conservation																					.	.
Alig confidence																					.	.
Template Conservation
Template Sequence		D	I	G	H	D	T	C	S	V	S	P	I	V	D	G	M	T	L	S	K	S	T	R	R	N	F	I	A	G	K	F	I	N	H	L	I
Template Known Secondary structure					S	S									T	T				G	G	G					S		S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions