Return to main results Retrieve Phyre Job Id

Job DescriptionP25552
Confidence90.71%DateThu Jan 5 11:42:09 GMT 2012
Rank87Aligned Residues113
% Identity11%Templatec3hc1A_
PDB info PDB header:structural genomics, unknown functionChain: A: PDB Molecule:uncharacterized hdod domain protein; PDBTitle: crystal structure of hdod domain protein with unknown function2 (np_953345.1) from geobacter sulfurreducens at 1.90 a resolution
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   324.....330.........340.........350.........360.........370.........380... ......390.
Predicted Secondary structure 






............






Query SS confidence 



























































. . . . . . . . . . . .







Query Sequence  IDQAQRVAKVAANFFDQVENEWHLEAISRDLLISACQLHEIGLSVDFKQAPQHAAYLVRN. . . . . . . . . . . . LDLPGFTP
Query Conservation    

  
   
  


 
     
      

  

 




  
     
 

 


  ............
 
 
 
 
Alig confidence 













......







































............







Template Conservation 
 

   
  
  
......
          
  







 
 
          
              
    
  
Template Sequence  WAHSLGVARIAKLI. . . . . . AERTGFLNPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITFGQAEERLFGTSH
Template Known Secondary structure  ......TT
S
TTTS


SS
Template Predicted Secondary structure  ......

















Template SS confidence 















































































   119120.........130.. .......140.........150.........160.........170.........180.........190..
 
   392.. .....400.........410.........420.........430.........440........
Predicted Secondary structure  ...........























Query SS confidence 


. . . . . . . . . . .





















































Query Sequence  AQK. . . . . . . . . . . KLLATLLLNQTNPVDLSSLHQQNAVPPRVAEQLCRLLRLAIIFASRRRDDLVPE
Query Conservation   
 ...........  

 
 



                  
  
  




  
   
       
Alig confidence 


...........
















......






























Template Conservation    

  
   
 

  
   
  

 
    ......         
 

  
               
Template Sequence  CEVGFALAKRWSLNEFICDTILYHHDIEAVP. . . . . . YKQAAIVAXVAFADEYCTLRRLGFEGHKPVD
Template Known Secondary structure  TT

TT
GGG
S......SS

TTS

S




S
Template Predicted Secondary structure 









......













Template SS confidence 



































































   193......200.........210.........220... ......230.........240.........250....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions