Job Description P25552 Confidence 90.71% Date Thu Jan 5 11:42:09 GMT 2012 Rank 87 Aligned Residues 113 % Identity 11% Template c3hc1A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized hdod domain protein; PDBTitle: crystal structure of hdod domain protein with unknown function2 (np_953345.1) from geobacter sulfurreducens at 1.90 a resolution Resolution 1.90 Å

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		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.													.	.	.	.	.	.	390	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	Q	A	Q	R	V	A	K	V	A	A	N	F	F	D	Q	V	E	N	E	W	H	L	E	A	I	S	R	D	L	L	I	S	A	C	Q	L	H	E	I	G	L	S	V	D	F	K	Q	A	P	Q	H	A	A	Y	L	V	R	N	.	.	.	.	.	.	.	.	.	.	.	.	L	D	L	P	G	F	T	P
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence		W	A	H	S	L	G	V	A	R	I	A	K	L	I	.	.	.	.	.	.	A	E	R	T	G	F	L	N	P	V	N	V	Y	V	A	G	L	L	H	D	V	G	E	V	F	I	N	F	F	R	G	K	E	F	S	Q	V	V	T	L	V	D	E	E	K	I	T	F	G	Q	A	E	E	R	L	F	G	T	S	H
Template Known Secondary structure																.	.	.	.	.	.				T	T		S											T	T	T										S																											S	S
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		392	.	.												.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	K	.	.	.	.	.	.	.	.	.	.	.	K	L	L	A	T	L	L	L	N	Q	T	N	P	V	D	L	S	S	L	H	Q	Q	N	A	V	P	P	R	V	A	E	Q	L	C	R	L	L	R	L	A	I	I	F	A	S	R	R	R	D	D	L	V	P	E
Query Conservation					.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.
Template Sequence		C	E	V	G	F	A	L	A	K	R	W	S	L	N	E	F	I	C	D	T	I	L	Y	H	H	D	I	E	A	V	P	.	.	.	.	.	.	Y	K	Q	A	A	I	V	A	X	V	A	F	A	D	E	Y	C	T	L	R	R	L	G	F	E	G	H	K	P	V	D
Template Known Secondary structure												T	T												T	T		G	G	G		S	.	.	.	.	.	.	S	S																		T	T	S			S						S
Template Predicted Secondary structure																																	.	.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.							.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions