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Job DescriptionP25552
Confidence97.21%DateThu Jan 5 11:42:09 GMT 2012
Rank41Aligned Residues159
% Identity21%Templatec2khoA_
PDB info PDB header:chaperoneChain: A: PDB Molecule:heat shock protein 70; PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  AIDLGSNSFHMLVVREVAGSIQTLTRI. . . . KRKVRLAAGLNSENALSNEAMER. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GIDLGTTNSCVAIM. . DGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQ
Template Known Secondary structure 

SS..TT


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   6...10......... 20.........30.........40.........50.........60.........70.........80...
 
   60.........70......... 80.........90.........100......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GWQCLRLFAERLQDIPPSQI. RVVATATLRLAVNAGDFIAKAQEILGC
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Template Sequence  RDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGL
Template Known Secondary structure 
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TTSBTT

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TTT
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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   107..110.........120.........130.........140.........150 .........160.........170.
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Query Sequence  PVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGT. . . . . . . . . GAQTTSLFSLSMGCVTWLERY
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Template Sequence  EVKRIINEPTAAALAYGLDKGTG. NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRL
Template Known Secondary structure  TTTTSSSS.
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   164.....170.........180...... ...190.........200.........210.........220.........230......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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