Job Description P25552 Confidence 39.07% Date Thu Jan 5 11:42:09 GMT 2012 Rank 171 Aligned Residues 179 % Identity 15% Template c2gupA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rok family protein; PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose Resolution 2.01 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	A	I	D	L	G	S	N	S	F	H	M	L	V	V	R	E	V	A	G	S	I	Q	T	L	T	R	I	K	R	K	V	R	L	A	A	G	L	N	S	E	N	A	L	S	N	E	A	M	E	R	G	W	Q	C	L	R	L	F	A	E	R	L	Q	D	I	P	P	S	Q	I	R	V	V	A	T	A	T	L
Query Conservation
Alig confidence																						.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																						.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Sequence		I	A	T	I	D	I	G	G	T	G	I	K	F	A	S	L	T	P	D	G	.	.	.	K	I	L	D	K	T	S	I	S	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	L	E	D	L	L	A	W	L	D	Q	R	L	S	E	Q	D	Y	S	.	G	I	A	X	S	V	P	G	A
Template Known Secondary structure									T	T									T	T		.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S													T	T	S			S	.							S	S
Template Predicted Secondary structure																						.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.				.	.	.	.	.	.	.	30	.	.	.																	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.
		88	.	90	.	.													.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	A	V	N	.	.	.	.	.	.	.	.	.	.	.	.	A	G	D	F	I	A	K	A	Q	E	I	L	G	C	P	V	Q	V	I	S	G	E	E	E	A	R	L	I	Y	Q	G	V	A	H	T	T	G	G	A	D	Q	R	L	V	V	D	I	G	G	A	S	T	E	L	V	T	G	T	G	A	Q	T	T
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.																									.
Template Conservation																																										.	.	.																									.
Template Sequence		V	N	Q	E	T	G	V	I	D	G	F	S	A	V	P	Y	I	H	G	F	S	W	Y	E	A	L	S	S	Y	Q	L	P	V	H	L	E	N	D	A	N	.	.	.	C	V	G	L	S	E	L	L	A	H	P	E	L	E	N	A	A	C	V	V	I	G	T	G	.	I	G	G	A	X	I	I	N	G	R	L	H
Template Known Secondary structure				T	T	T		B			S			S	S	G	G	G	S	S	S	B					T	G	G	G												.	.	.											T	T		S	S							S	S	S	.								T	T
Template Predicted Secondary structure																																										.	.	.																									.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.				.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.
		156																																									.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	S	L	S	M	G	C	V	T	W	L	E	R	Y	F	A	D	R	N	L	G	Q	E	N	F	D	A	A	E	K	A	A	R	E	V	L	R	P
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	R	H	G	L	G	G	E	F	G	Y	X	T	T	L	A	P	A	E	K	L	N	N	W	S	Q	L	A	S	T	G	N	X	V	R	Y	V	I	E	K	S	G	H	T	D	W	D	G	R	K	I	Y	Q	E	A	A	A	G	N	I	L	C	Q	E	A	I	E	R	X	N	R	N	L	A	Q	G	L	L	N
Template Known Secondary structure				T	T	S		T	T		G	G	G		B	S	S			S	S	S			B						S													S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	D	E	L	R	Y	H	G	W	K	V	C	V	G	A	S	G
Query Conservation
Alig confidence							.	.	.
Template Conservation							.	.	.
Template Sequence		I	Q	Y	L	I	.	.	.	D	P	G	V	I	S	L	G	G	S
Template Known Secondary structure							.	.	.			S						S	G
Template Predicted Secondary structure							.	.	.
Template SS confidence
		219	220	.	.	.				.	.	.	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions