 |
Job Description | P25552 | Confidence | 70.09% | Date | Thu Jan 5 11:42:09 GMT 2012 |
Rank | 139 | Aligned Residues | 81 |
% Identity | 14% | Template | c2gruB_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase; |
PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+
|
Resolution | 2.15 Å |
|
 |
  |   |
63 | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | L | R | L | F | A | E | R | L | Q | D | I | P | P | S | Q | I | R | V | V | A | T | A | T | L | R | L | A | V | N | A | G | D | F | I | A | K | A | Q | E | I | L | G | C | P | V | Q | V | I | S | G | . |
. |
. |
. |
. |
E | E | E | A | R | L | I | Y | Q | G | V | A | H | T | T | G | G | A | D | Q | R | L | V | V |
Query Conservation |   |
  |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|
|
|
|
|
|   |
|   |
|   |   |   |
|
|   |   |
|   |   |   |
|
|   |   |
|   |
|
|
|
| . | . | . | . | . |   |
|
|
|   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |
|
|
|
|
|   |   |   |   |   |   | . |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|
Template Sequence |   |
V | L | E | S | V | E | S | Y | I | P | R | D | E | F | D | Q | Y | I | M | I | S | D | S | G | V | P | D | S | . |
I | V | H | Y | A | A | E | Y | F | G | K | L | A | P | V | H | I | L | R | F | Q | G | G | E | E | Y | K | T | L | S | T | V | T | N | L | Q | E | R | A | I | A | L | G | A | N | R | R | T | A | I | V |
Template Known Secondary structure |   |
| G | G | G | G | G | G | T | S |
| S | S | S |
| S |  |  |  |  |  |  |  | T | T | S |
|  |  | . |  |  |  |  |  |  |  |  |  | T | T | T | S |
|  |  |  |  |  |  |
|
| S | G | G | G |
| B |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| T | T |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
21 | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | |
. | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . |
  |
  |   |
138 | . | 140 | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
D | I | G | G | A | S | T |
Query Conservation |   |
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
Template Sequence |   |
A | V | G | G | G | L | T |
Template Known Secondary structure |   |
 |  |  | S |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
100 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|