Job Description P25552 Confidence 98.08% Date Thu Jan 5 11:42:09 GMT 2012 Rank 20 Aligned Residues 218 % Identity 17% Template c1mwmA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form Resolution 2.00 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.																				.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Y	A	A	I	D	L	G	S	N	S	F	H	M	L	V	V	R	E	V	A	G	S	I	Q	T	L	T	R	I	K	R	K	V	R	L	A	A	G	L	N	S	E	N	A	L	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	M	E	R	G	W	Q	C	L	R	L	F
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	L	V	F	I	D	D	G	S	T	N	I	K	L	Q	W	Q	E	S	D	G	T	I	K	Q	H	I	S	P	N	S	F	K	R	E	W	A	V	S	F	G	D	K	K	V	F	N	Y	T	L	N	G	E	Q	Y	S	F	D	P	I	S	P	D	T	N	I	A	W	Q	Y	S	D	V	N	V	V	A	V	H	H
Template Known Secondary structure										S	S									T	T	S													S	S					S	S	S	S							S	S	S														T	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.						.	.	.	.	.	.	100	.	.	.	.	.	.	.											.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																												.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	R	L	Q	D	I	P	P	S	Q	I	R	V	V	A	T	A	T	L	R	L	A	V	N	A	.	.	.	.	.	G	D	F	I	A	K	A	Q	E	I	L	G	C	P	.	.	.	.	.	.	.	.	.	.	V	Q	V	I	S	G	E	E	E	A	R	L	I	Y	Q	G	V	A	H	T	T	G	G	A	D
Query Conservation																												.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	L	T	S	G	L	P	V	S	E	V	D	I	V	C	T	L	P	L	T	E	Y	Y	D	R	N	N	Q	P	N	T	E	N	I	E	R	K	K	A	N	F	R	K	K	I	T	L	N	G	G	D	T	F	T	I	K	D	V	K	V	M	P	E	S	I	P	A	G	Y	E	V	L	Q	E	L	D	E	L	D
Template Known Secondary structure					T	S	S			S															B		T	T	S		B												T	T	S					T	T	B													S										T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																													.	.	.	.	.	180	.
Predicted Secondary structure																								.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	R	L	V	V	D	I	G	G	A	S	T	E	L	V	T	G	T	G	A	Q	T	.	.	.	T	S	L	F	S	L	S	M	G	C	V	T	W	L	E	R	Y	F	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	L	G	Q	E	N
Query Conservation																								.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	L	I	I	D	L	G	G	T	T	L	D	I	S	Q	V	M	G	K	L	S	G	I	S	K	I	Y	G	D	S	S	L	G	V	S	L	V	T	S	A	V	K	D	A	L	S	L	A	R	T	K	G	S	S	Y	L	A	D	D	I	I	I	H	R	K	D	N	N	Y	L	K	Q	R	I	N	D	E	N	K
Template Known Secondary structure										S	S									G	G	G										T	T														T	T			T	T	G	G	G										T	T	T										S		S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.						.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		F	D	A	A	E	K	A	A	R	E	V	L	R	P	V	A	D	E	L	R	Y	H	.	.	.	.	.	G	W	K	V	C	V	G	A	S	G	T	V	Q	A	L	Q	E	I	M	M	A
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.
Template Conservation
Template Sequence		I	S	I	V	T	E	A	M	N	E	A	L	R	K	L	E	Q	R	V	L	N	T	L	N	E	F	S	G	Y	T	H	V	M	V	I	G	G	G	A	E	L	I	C	D	A	V	K	K
Template Known Secondary structure																									T	T			S								S	T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions