Job Description P0A7V0 Confidence 100.00% Date Thu Jan 5 11:06:16 GMT 2012 Rank 5 Aligned Residues 190 % Identity 28% Template c3iz6A_ PDB info PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		M	A	T	V	S	M	R	D	M	L	K	A	G	V	H	F	G	H	Q	T	R	Y	W	N	P	K	M	K	P	F	I	F	G	A	R	N	.	K	V	H	I	I	N	L	E	K	T	V	P	M	F	N	E	A	L	A	E	L	N	K	I	A	S	R	K	G	K	I	L	F	V	G	T	K	R	A	A	S	E	A
Query Conservation																																						.
Alig confidence																				.	.																	.																									.
Template Conservation																				.	.																																										.
Template Sequence		Q	R	E	Q	D	I	Q	M	M	L	A	A	D	V	H	L	G	T	.	.	K	N	C	D	F	Q	M	E	R	Y	V	Y	K	R	R	T	D	G	I	Y	I	I	N	L	G	K	T	W	E	K	L	Q	L	A	A	R	V	I	V	A	I	.	E	N	P	Q	D	I	I	V	Q	S	A	R	P	Y	G	Q	R	A
Template Known Secondary structure		S			S											S	S		B	.	.	S				T	T	T	T	T	S						T	T	T																							T	.	T	S	S									S
Template Predicted Secondary structure																				.	.																																										.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	D	A	A	L	S	C	D	Q	F	F	V	N	H	R	W	L	G	G	M	L	T	N	W	K	T	V	R	Q	S	I	K	R	L	K	D	L	E	T	Q	S	Q	D	G	T	F	D	K	L	T	K	K	E	A	L	M	R	T	R	E	L	E	K	L	E	N	S	L	G	G	I	K	D	M	G	G	L	P	D
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	K	F	A	Q	Y	T	G	A	H	A	I	A	G	R	H	T	P	G	T	F	T	N	Q	L	Q	T	S	F	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R
Template Known Secondary structure										T						S				T	T	T	T	T	T	T	T	T	S		S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																																															.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	F	V	I	D	A	D	H	E	H	I	A	I	K	E	A	N	N	L	G	I	P	V	F	A	I	V	D	T	N	S	D	P	D	G	V	D	F	V	I	P	G	N	D	D	A	I	R	A	V	T	L	Y	L	G	A	V	A	A	T	V	R	E	G	R	S	Q	D	L	A	S	Q	A	E	E	S	F	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	I	L	T	D	P	R	T	D	H	Q	P	I	K	E	S	A	L	G	N	I	P	T	I	A	F	C	D	T	D	S	P	M	R	Y	V	D	I	G	I	P	A	N	N	K	G	K	Q	S	I	G	C	L	F	W	L	L	A	R	M	V	L	Q	M	R	G	T	I	L	P	G	H	K	W	D	V	M	V	D
Template Known Secondary structure						S		T	T	T	T											T									T	T	S		G	G	G		S					S			S	S	T																	T	T	S	S			S									S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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