Job Description P0A7V0 Confidence 73.81% Date Thu Jan 5 11:06:16 GMT 2012 Rank 31 Aligned Residues 111 % Identity 17% Template c3hgtA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hda1 complex subunit 3; PDBTitle: structural and functional studies of the yeast class ii hda12 hdac complex Resolution 2.20 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	N	E	A	L	A	E	L	N	K	I	A	S	R	K	G	K	I	L	F	V	G	T	K	R	A	A	S	E	A	V	K	D	A	A	L	S	C	D	Q	F	F	V	N	H	R	W	L	G	G	M	L	T	N	W	K	T	V	R	Q	S	I	K	R	L	K	D	L	E	T	Q	S	Q	D	G	T	F	D	K
Query Conservation
Alig confidence																																														.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	F	S	V	L	R	D	L	I	N	L	V	Q	E	Y	E	T	E	T	A	I	V	C	R	P	G	R	T	M	D	L	L	E	A	L	L	L	G	N	K	V	H	I	K	.	.	R	Y	D	G	H	S	I	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	C	T	V	H	L	F	S
Template Known Secondary structure														T	T	S										S	T											T	T	S	S					.	.		S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																														.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.																		.	.	170	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		L	T	K	K	E	A	L	M	R	T	R	E	L	E	K	L	E	N	S	L	G	G	I	K	D	M	G	G	L	P	D	A	L	F	V	I	D	A	D	H	E	H	.	.	I	A	I	K	E	A	N	N	L	G	I	P	V	F	A	I	V	D	T	N	S
Query Conservation																																												.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	N	F	T	K	Y	P	I	K	S	K	A	R	F	D	M	L	I	C	L	D	T	T	V	D	T	S	Q	K	D	I	Q	Y	L	L	Q	Y	K	A	P	I	V	R	L	V	A	I	N	S
Template Known Secondary structure		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T	S						S			S						S	T	T			T	T	S																			T	T	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.														.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions