Email l.a.kelley@imperial.ac.uk Description P05719 Date Thu Jan 5 10:58:51 GMT 2012 Unique Job ID 2f2288fafa37e2b3

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2y7cA_ 100.0 100 PDB header:transferase Chain: A: PDB Molecule:type-1 restriction enzyme ecoki specificity protein; PDBTitle: atomic model of the ocr-bound methylase complex from the2 type i restriction-modification enzyme ecoki (m2s1). based3 on fitting into em map 1534. 2 c1yf2A_ 100.0 15 PDB header:hydrolase regulator Chain: A: PDB Molecule:type i restriction-modification enzyme, s subunit; PDBTitle: three-dimensional structure of dna sequence specificity (s) subunit of2 a type i restriction-modification enzyme and its functional3 implications 3 c3okgB_ 100.0 20 PDB header:dna binding protein Chain: B: PDB Molecule:restriction endonuclease s subunits; PDBTitle: crystal structure of hsds subunit from thermoanaerobacter2 tengcongensis 4 c1ydxA_ 100.0 14 PDB header:dna binding protein Chain: A: PDB Molecule:type i restriction enzyme specificity protein mg438; PDBTitle: crystal structure of type-i restriction-modification system s subunit2 from m. genitalium 5 d1yf2a2 99.9 22 Fold:DNA methylase specificity domain Superfamily:DNA methylase specificity domain Family:Type I restriction modification DNA specificity domain 6 d1yf2a1 99.9 21 Fold:DNA methylase specificity domain Superfamily:DNA methylase specificity domain Family:Type I restriction modification DNA specificity domain 7 d1ydxa2 99.9 14 Fold:DNA methylase specificity domain Superfamily:DNA methylase specificity domain Family:Type I restriction modification DNA specificity domain 8 d1ydxa1 99.8 18 Fold:DNA methylase specificity domain Superfamily:DNA methylase specificity domain Family:Type I restriction modification DNA specificity domain 9 c1aqjB_ 96.8 9 PDB header:methyltransferase Chain: B: PDB Molecule:adenine-n6-dna-methyltransferase taqi; PDBTitle: structure of adenine-n6-dna-methyltransferase taqi 10 c1g38A_ 96.5 9 PDB header:transferase/dna Chain: A: PDB Molecule:modification methylase taqi; PDBTitle: adenine-specific methyltransferase m. taq i/dna complex 11 c3s1sA_ 91.4 14 PDB header:hydrolase, transferase Chain: A: PDB Molecule:restriction endonuclease bpusi; PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi 12 d2ih2a2 78.3 10 Fold:DNA methylase specificity domain Superfamily:DNA methylase specificity domain Family:TaqI C-terminal domain-like 13 c1yiuA_ 61.7 38 PDB header:ligase Chain: A: PDB Molecule:itchy e3 ubiquitin protein ligase; PDBTitle: itch e3 ubiquitin ligase ww3 domain 14 c2kykA_ 58.0 38 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog; PDBTitle: the sandwich region between two lmp2a py motif regulates the2 interaction between aip4ww2domain and py motif 15 c2djyA_ 51.1 46 PDB header:ligase/signaling protein Chain: A: PDB Molecule:smad ubiquitination regulatory factor 2; PDBTitle: solution structure of smurf2 ww3 domain-smad7 py peptide2 complex 16 c2jmfA_ 49.5 46 PDB header:ligase/signaling protein Chain: A: PDB Molecule:e3 ubiquitin-protein ligase suppressor of deltex; PDBTitle: solution structure of the su(dx) ww4- notch py peptide2 complex 17 c2yscA_ 48.8 43 PDB header:protein binding Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family PDBTitle: solution structure of the ww domain from the human amyloid2 beta a4 precursor protein-binding family b member 3, apbb3 18 d1tk7a2 46.7 46 Fold:WW domain-like Superfamily:WW domain Family:WW domain 19 c2lawA_ 43.4 55 PDB header:signaling protein/transcription Chain: A: PDB Molecule:yorkie homolog; PDBTitle: structure of the second ww domain from human yap in complex with a2 human smad1 derived peptide 20 d2jmfa1 42.4 55 Fold:WW domain-like Superfamily:WW domain Family:WW domain 21 d1tk7a1 not modelled 39.9 38 Fold:WW domain-like Superfamily:WW domain Family:WW domain 22 c2dmvA_ not modelled 39.3 31 PDB header:ligase Chain: A: PDB Molecule:itchy homolog e3 ubiquitin protein ligase; PDBTitle: solution structure of the second ww domain of itchy homolog2 e3 ubiquitin protein ligase (itch) 23 c2yshA_ not modelled 39.0 31 PDB header:protein binding Chain: A: PDB Molecule:growth-arrest-specific protein 7; PDBTitle: solution structure of the ww domain from the human growth-2 arrest-specific protein 7, gas-7 24 c2lb0A_ not modelled 38.2 40 PDB header:signaling protein/transcription Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1; PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide 25 c2lazA_ not modelled 38.2 40 PDB header:signaling protein/transcription Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1; PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide 26 d1seda_ not modelled 36.0 20 Fold:Hypothetical protein YhaI Superfamily:Hypothetical protein YhaI Family:Hypothetical protein YhaI 27 d1gxha_ not modelled 35.9 35 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 28 d2vlqa1 not modelled 35.3 26 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 29 c1pqvS_ not modelled 35.2 20 PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex 30 d1ayia_ not modelled 34.3 30 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 31 c1wmvA_ not modelled 34.1 43 PDB header:oxidoreductase, apoptosis Chain: A: PDB Molecule:ww domain containing oxidoreductase; PDBTitle: solution structure of the second ww domain of wwox 32 c2ysgA_ not modelled 33.9 38 PDB header:protein binding Chain: A: PDB Molecule:syntaxin-binding protein 4; PDBTitle: solution structure of the ww domain from the human syntaxin-2 binding protein 4 33 c1wr7A_ not modelled 33.7 29 PDB header:ligase Chain: A: PDB Molecule:nedd4-2; PDBTitle: solution structure of the third ww domain of nedd4-2 34 d1pina1 not modelled 33.6 56 Fold:WW domain-like Superfamily:WW domain Family:WW domain 35 c2dwvB_ not modelled 32.9 29 PDB header:protein binding Chain: B: PDB Molecule:salvador homolog 1 protein; PDBTitle: solution structure of the second ww domain from mouse2 salvador homolog 1 protein (mww45) 36 c3l4hA_ not modelled 32.9 38 PDB header:protein binding Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hecw1; PDBTitle: helical box domain and second ww domain of the human e3 ubiquitin-2 protein ligase hecw1 37 c2l4jA_ not modelled 32.9 70 PDB header:transcription Chain: A: PDB Molecule:yes-associated protein 2 (yap2); PDBTitle: yap ww2 38 c1y1yS_ not modelled 32.5 20 PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex 39 c3m9hB_ not modelled 32.2 24 PDB header:chaperone Chain: B: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain of the2 mycobacterium tuberculosis proteasomal atpase mpa 40 c2no8A_ not modelled 32.1 35 PDB header:immune system Chain: A: PDB Molecule:colicin-e2 immunity protein; PDBTitle: nmr structure analysis of the colicin immuntiy protein im2 41 d1i5hw_ not modelled 30.9 38 Fold:WW domain-like Superfamily:WW domain Family:WW domain 42 c2ysfA_ not modelled 30.7 38 PDB header:protein binding Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog; PDBTitle: solution structure of the fourth ww domain from the human2 e3 ubiquitin-protein ligase itchy homolog, itch 43 d2p0ta1 not modelled 30.7 16 Fold:PSPTO4464-like Superfamily:PSPTO4464-like Family:PSPTO4464-like 44 c2p0tA_ not modelled 30.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0307 protein pspto_4464; PDBTitle: structural genomics, the crystal structure of a conserved putative2 protein from pseudomonas syringae pv. tomato str. dc3000 45 c2ysdA_ not modelled 30.0 50 PDB header:protein binding Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz PDBTitle: solution structure of the first ww domain from the human2 membrane-associated guanylate kinase, ww and pdz domain-3 containing protein 1. magi-1 46 c3bc1F_ not modelled 29.9 17 PDB header:signaling protein/transport protein Chain: F: PDB Molecule:synaptotagmin-like protein 2; PDBTitle: crystal structure of the complex rab27a-slp2a 47 d1i8gb_ not modelled 29.2 56 Fold:WW domain-like Superfamily:WW domain Family:WW domain 48 c3p8cE_ not modelled 28.6 16 PDB header:protein binding Chain: E: PDB Molecule:probable protein brick1; PDBTitle: structure and control of the actin regulatory wave complex 49 d2crua1 not modelled 25.9 16 Fold:RuvA C-terminal domain-like Superfamily:Double-stranded DNA-binding domain Family:Double-stranded DNA-binding domain 50 c1yw5A_ not modelled 23.9 38 PDB header:isomerase Chain: A: PDB Molecule:peptidyl prolyl cis/trans isomerase; PDBTitle: peptidyl-prolyl isomerase ess1 from candida albicans 51 c2dmeA_ not modelled 23.4 23 PDB header:metal binding protein Chain: A: PDB Molecule:phd finger protein 3; PDBTitle: solution structure of the tfiis domain ii of human phd2 finger protein 3 52 c2gl2B_ not modelled 22.9 17 PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada 53 c3le4A_ not modelled 22.3 44 PDB header:nuclear protein Chain: A: PDB Molecule:microprocessor complex subunit dgcr8; PDBTitle: crystal structure of the dgcr8 dimerization domain 54 c1tk7A_ not modelled 21.8 38 PDB header:signaling protein Chain: A: PDB Molecule:cg4244-pb; PDBTitle: nmr structure of ww domains (ww3-4) from suppressor of2 deltex 55 c1e0mA_ not modelled 21.7 44 PDB header:de novo protein Chain: A: PDB Molecule:wwprototype; PDBTitle: prototype ww domain 56 c1ymzA_ not modelled 21.4 40 PDB header:unknown function Chain: A: PDB Molecule:cc45; PDBTitle: cc45, an artificial ww domain designed using statistical2 coupling analysis 57 d2f21a1 not modelled 20.6 44 Fold:WW domain-like Superfamily:WW domain Family:WW domain 58 d2itka1 not modelled 20.5 63 Fold:WW domain-like Superfamily:WW domain Family:WW domain 59 c2ysbA_ not modelled 20.4 36 PDB header:protein binding Chain: A: PDB Molecule:salvador homolog 1 protein; PDBTitle: solution structure of the first ww domain from the mouse2 salvador homolog 1 protein (sav1) 60 d1k9ra_ not modelled 20.1 38 Fold:WW domain-like Superfamily:WW domain Family:WW domain 61 c2zajA_ not modelled 19.6 40 PDB header:protein binding Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz PDBTitle: solution structure of the short-isoform of the second ww2 domain from the human membrane-associated guanylate kinase,3 ww and pdz domain-containing protein 1 (magi-1) 62 c1wr4A_ not modelled 18.5 44 PDB header:ligase Chain: A: PDB Molecule:ubiquitin-protein ligase nedd4-2; PDBTitle: solution structure of the second ww domain of nedd4-2 63 c2kq0A_ not modelled 18.4 44 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4; PDBTitle: human nedd4 3rd ww domain complex with ebola zaire virus matrix2 protein vp40 derived peptide ilptappeymea 64 d3dlqi1 not modelled 18.0 27 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Interferons/interleukin-10 (IL-10) 65 c2jv4A_ not modelled 18.0 38 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis/trans isomerase; PDBTitle: structure characterisation of pina ww domain and comparison2 with other group iv ww domains, pin1 and ess1 66 c2ez5W_ not modelled 17.6 23 PDB header:signalling protein,ligase Chain: W: PDB Molecule:e3 ubiquitin-protein ligase nedd4; PDBTitle: solution structure of the dnedd4 ww3* domain- comm lpsy2 peptide complex 67 d1ig4a_ not modelled 17.2 17 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:Methyl-CpG-binding domain, MBD 68 d2ho2a1 not modelled 17.0 36 Fold:WW domain-like Superfamily:WW domain Family:WW domain 69 d1f8ab1 not modelled 16.8 36 Fold:WW domain-like Superfamily:WW domain Family:WW domain 70 c3olmA_ not modelled 15.6 63 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rsp5; PDBTitle: structure and function of a ubiquitin binding site within the2 catalytic domain of a hect ubiquitin ligase 71 d1dd5a_ not modelled 14.8 17 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 72 c2gleA_ not modelled 14.0 7 PDB header:protein binding Chain: A: PDB Molecule:neurabin-1; PDBTitle: solution structure of neurabin sam domain 73 c1bm4A_ not modelled 14.0 41 PDB header:viral protein Chain: A: PDB Molecule:protein (moloney murine leukemia virus capsid); PDBTitle: momlv capsid protein major homology region peptide analog 74 c2fh0A_ not modelled 14.0 13 PDB header:unknown function Chain: A: PDB Molecule:hypothetical 16.0 kda protein in abf2-chl12 PDBTitle: nmr ensemble of the yeast saccharomyces cerevisiae protein2 ymr074cp core region 75 d1ek8a_ not modelled 13.3 20 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 76 d2ysca1 not modelled 13.1 44 Fold:WW domain-like Superfamily:WW domain Family:WW domain 77 c3uorB_ not modelled 12.6 18 PDB header:sugar binding protein Chain: B: PDB Molecule:abc transporter sugar binding protein; PDBTitle: the structure of the sugar-binding protein male from the phytopathogen2 xanthomonas citri 78 c3kxeD_ not modelled 12.1 13 PDB header:protein binding Chain: D: PDB Molecule:antitoxin protein pard-1; PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex 79 d1wqga1 not modelled 12.0 19 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 80 c3cqxD_ not modelled 12.0 30 PDB header:chaperone Chain: D: PDB Molecule:bag family molecular chaperone regulator 2; PDBTitle: chaperone complex 81 d1nmva1 not modelled 11.6 46 Fold:WW domain-like Superfamily:WW domain Family:WW domain 82 d1zkea1 not modelled 11.4 12 Fold:ROP-like Superfamily:HP1531-like Family:HP1531-like 83 d1ge9a_ not modelled 11.3 29 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 84 c2ky8A_ not modelled 11.3 19 PDB header:transcription/dna Chain: A: PDB Molecule:methyl-cpg-binding domain protein 2; PDBTitle: solution structure and dynamic analysis of chicken mbd2 methyl binding2 domain bound to a target methylated dna sequence 85 c2ysiA_ not modelled 11.2 23 PDB header:protein binding Chain: A: PDB Molecule:transcription elongation regulator 1; PDBTitle: solution structure of the first ww domain from the mouse2 transcription elongation regulator 1, transcription factor3 ca150 86 c2ejxA_ not modelled 10.8 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:st0812; PDBTitle: crystal structure of the hypothetical protein st0812 from2 sulfolobus tokodaii 87 d1eh1a_ not modelled 10.8 14 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 88 c1f8aB_ not modelled 10.6 42 PDB header:isomerase Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima- PDBTitle: structural basis for the phosphoserine-proline recognition2 by group iv ww domains 89 d1is1a_ not modelled 10.4 17 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 90 d2gsva1 not modelled 10.0 21 Fold:Open three-helical up-and-down bundle Superfamily:YvfG-like Family:YvfG-like 91 c1lypA_ not modelled 9.4 17 PDB header:lipopolysaccharide-binding protein Chain: A: PDB Molecule:cap18; PDBTitle: the solution structure of the active domain of cap18: a2 lipopolysaccharide binding protein from rabbit leukocytes 92 d2clyb1 not modelled 9.3 12 Fold:ATP synthase D chain-like Superfamily:ATP synthase D chain-like Family:ATP synthase D chain-like 93 c3npfB_ not modelled 9.2 13 PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution 94 d2evra2 not modelled 9.2 13 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60 95 d2nrka1 not modelled 9.2 11 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:GrpB-like 96 c3qufB_ not modelled 9.0 17 PDB header:transport protein Chain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis 97 c2oarA_ not modelled 8.9 16 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl) 98 c3pmdA_ not modelled 8.9 29 PDB header:lipid binding protein Chain: A: PDB Molecule:conserved domain protein; PDBTitle: crystal structure of the sporulation inhibitor pxo1-118 from bacillus2 anthracis 99 c2xzmW_ not modelled 8.7 14 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1