Job Description P05719 Confidence 100.00% Date Thu Jan 5 10:58:51 GMT 2012 Rank 3 Aligned Residues 384 % Identity 20% Template c3okgB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:restriction endonuclease s subunits; PDBTitle: crystal structure of hsds subunit from thermoanaerobacter2 tengcongensis Resolution 1.95 Å

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		1	.	.	.	.					.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure							.	.	.	.																																														.	.
Query SS confidence							.	.	.	.																																														.	.
Query Sequence		M	S	A	G	K	.	.	.	.	L	P	E	G	W	V	I	A	P	V	S	T	V	T	T	L	I	R	G	V	T	Y	K	K	E	Q	A	I	N	Y	L	K	D	D	Y	L	P	L	I	R	A	N	N	I	Q	.	.	N	G	K	F	D	T	T	D	L	V	F	V	P	K	N	L	V	K	E	S	Q	K	I	S
Query Conservation							.	.	.	.																																														.	.
Alig confidence				.	.		.	.	.	.																											.	.	.	.	.	.														.	.
Template Conservation				.	.																																.	.	.	.	.	.
Template Sequence		M	T	.	.	E	G	P	Y	K	L	P	P	G	W	R	W	V	R	L	G	E	V	C	L	P	T	E	R	R	D	P	T	K	N	P	.	.	.	.	.	.	S	T	Y	F	V	Y	V	D	I	S	A	I	D	S	T	V	G	K	I	V	S	P	K	E	I	L	G	Q	H	A	P	S	R	A	R	K	V	I	R
Template Known Secondary structure				.	.	S		S	S				T	T						G	G	G	G	B					B			G	G	G	S	T	.	.	.	.	.	.	T								G	G	G			T	T	T	T										G	G	G			T	T
Template Predicted Secondary structure				.	.																																.	.	.	.	.	.
Template SS confidence
		1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.							.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		P	E	D	I	V	I	A	M	S	S	G	S	K	S	V	V	G	K	S	A	H	Q	H	L	P	F	E	C	S	F	G	A	F	C	G	V	L	R	P	E	K	L	I	F	S	G	F	I	A	H	F	T	K	S	S	L	Y	R	N	K	I	S	.	S	L	S	A	G	A	N	I	N	N	I	K	P	A	S	F	D
Query Conservation																																																																.
Alig confidence																															.																																	.
Template Conservation																															.
Template Sequence		S	G	D	V	I	F	A	T	T	R	P	Y	L	K	N	I	A	L	V	P	P	D	L	D	G	Q	I	C	S	.	T	G	F	C	V	I	R	A	N	R	E	F	A	E	P	E	F	L	F	H	L	C	R	S	D	F	I	T	N	Q	L	T	A	S	K	M	R	G	T	S	Y	P	A	V	T	D	N	D	V	Y
Template Known Secondary structure		T	T						S	S	S	G	G	G								G	G	G	T	T					.	T	T						B		T	T	T											T	S					T	T		G	G	G	S	S			T	T
Template Predicted Secondary structure																															.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	N	I	P	I	P	P	L	A	E	Q	K	I	I	A	E	K	L	D	T	L	L	A	Q	V	D	S	T	K	A	R	F	E	Q	I	P	Q	I	L	K	R	F	R	Q	A	V	L	G	G	A	V	N	G	K	L	T	E	K	W	R	N	F	E	P	Q	H	S	V	F	K	K	L	N	F	E	S	I	L	T
Query Conservation
Alig confidence																																																									.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		N	T	L	I	P	L	P	P	L	E	E	Q	R	R	I	V	A	K	V	E	A	L	M	E	R	V	R	E	V	R	R	L	R	A	E	A	Q	K	D	T	E	L	L	M	Q	T	A	L	A	E	V	F	P	H	P	.	.	.	.	.	G	A	D	L	P	P	G	W	R	W	V	R	L	G	E	V	C	D	I	I
Template Known Secondary structure		T	S																																																		S			T	.	.	.	.	.	T	S				T	T
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.						.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	R	N	G	L	S	S	K	P	N	E	S	G	V	G	H	P	I	L	R	I	S	S	V	R	A	G	H	V	D	Q	N	D	I	R	F	L	E	C	S	E	S	E	L	N	R	H	K	L	Q	D	G	D	L	L	F	T	R	Y	N	G	S	L	E	F	V	G	V	C	G	L	L	K	K	L	Q	H	Q	N
Query Conservation
Alig confidence																														.	.	.	.	.	.																												.	.	.	.									.	.	.	.
Template Conservation																														.	.	.	.	.	.																												.	.	.	.									.	.	.	.
Template Sequence		M	G	Q	S	P	P	S	S	T	Y	N	F	E	G	N	G	L	P	F	F	Q	G	K	A	D	F	G	D	.	.	.	.	.	.	L	H	P	T	P	R	I	W	C	S	A	P	Q	K	V	A	R	P	G	D	V	L	I	S	V	R	A	.	.	.	.	P	V	G	S	T	N	V	A	.	.	.	.	N	L	A
Template Known Secondary structure								T	T				S	S	S	S	S						S	G	G	G			S	.	.	.	.	.	.	S	S								S	S			S				T	T							S	S	.	.	.	.	S								.	.	.	.		S
Template Predicted Secondary structure																														.	.	.	.	.	.																												.	.	.	.									.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.							.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.					.	.	.	.	.	.	.	.					290	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	Y	P	D	K	L	I	R	A	R	L	T	K	D	A	L	P	E	Y	I	E	I	F	F	S	S	P	S	A	R	N	A	M	M	N	C	V	K	T	T	S	G	Q	K	G	I	S	G	K	D	I	K	S	Q	V	V	L	L	P	P	V	K	E	Q	A	E	I	V	R	R	V	E	Q	L	F	A	Y	A	D
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.
Template Sequence		C	C	I	G	R	G	L	A	A	L	R	P	R	D	S	L	E	R	F	W	L	L	Y	Y	L	H	Y	.	.	.	.	.	.	.	.	.	.	L	E	P	E	L	S	K	M	A	I	T	K	K	D	L	Q	N	V	F	I	P	L	P	P	L	E	E	Q	R	R	I	V	A	Y	L	D	Q	I	Q	Q	Q	V	A
Template Known Secondary structure						T	T								T	T	S												.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.											320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	E	K	Q	V	N	N	A	L	A	R	V	N	N	L	T	Q	S	I	L	A	K	A	F	R	G	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	K	R	A	Q	A	E	T	E	A	E	L	K	R	L	E	Q	A	I	L	D	K	A	F	R	G	D	L
Template Known Secondary structure							S	S	S		T	T														T	T	T
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.