Job Description P05719 Confidence 100.00% Date Thu Jan 5 10:58:51 GMT 2012 Rank 1 Aligned Residues 464 % Identity 100% Template c2y7cA_ PDB info PDB header:transferase Chain: A: PDB Molecule:type-1 restriction enzyme ecoki specificity protein; PDBTitle: atomic model of the ocr-bound methylase complex from the2 type i restriction-modification enzyme ecoki (m2s1). based3 on fitting into em map 1534. Resolution 18.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	A	G	K	L	P	E	G	W	V	I	A	P	V	S	T	V	T	T	L	I	R	G	V	T	Y	K	K	E	Q	A	I	N	Y	L	K	D	D	Y	L	P	L	I	R	A	N	N	I	Q	N	G	K	F	D	T	T	D	L	V	F	V	P	K	N	L	V	K	E	S	Q	K	I	S	P	E	D	I	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	S	A	G	K	L	P	E	G	W	V	I	A	P	V	S	T	V	T	T	L	I	R	G	V	T	Y	K	K	E	Q	A	I	N	Y	L	K	D	D	Y	L	P	L	I	R	A	N	N	I	Q	N	G	K	F	D	T	T	D	L	V	F	V	P	K	N	L	V	K	E	S	Q	K	I	S	P	E	D	I	V	I
Template Known Secondary structure				S	S				S	S											S										S	S						S	S			S										S	S	S	B				S										S	S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	S	S	G	S	K	S	V	V	G	K	S	A	H	Q	H	L	P	F	E	C	S	F	G	A	F	C	G	V	L	R	P	E	K	L	I	F	S	G	F	I	A	H	F	T	K	S	S	L	Y	R	N	K	I	S	S	L	S	A	G	A	N	I	N	N	I	K	P	A	S	F	D	L	I	N	I	P	I	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	M	S	S	G	S	K	S	V	V	G	K	S	A	H	Q	H	L	P	F	E	C	S	F	G	A	F	C	G	V	L	R	P	E	K	L	I	F	S	G	F	I	A	H	F	T	K	S	S	L	Y	R	N	K	I	S	S	L	S	A	G	A	N	I	N	N	I	K	P	A	S	F	D	L	I	N	I	P	I	P
Template Known Secondary structure					S	S	S	S	S	S							B		S	S	S		B			S	S								T	T	T	S											S									T	T		S		S	S			S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	A	E	Q	K	I	I	A	E	K	L	D	T	L	L	A	Q	V	D	S	T	K	A	R	F	E	Q	I	P	Q	I	L	K	R	F	R	Q	A	V	L	G	G	A	V	N	G	K	L	T	E	K	W	R	N	F	E	P	Q	H	S	V	F	K	K	L	N	F	E	S	I	L	T	E	L	R	N	G	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	A	E	Q	K	I	I	A	E	K	L	D	T	L	L	A	Q	V	D	S	T	K	A	R	F	E	Q	I	P	Q	I	L	K	R	F	R	Q	A	V	L	G	G	A	V	N	G	K	L	T	E	K	W	R	N	F	E	P	Q	H	S	V	F	K	K	L	N	F	E	S	I	L	T	E	L	R	N	G	L	S
Template Known Secondary structure																																														S		S						S	S	S	S			S	S																				S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	P	N	E	S	G	V	G	H	P	I	L	R	I	S	S	V	R	A	G	H	V	D	Q	N	D	I	R	F	L	E	C	S	E	S	E	L	N	R	H	K	L	Q	D	G	D	L	L	F	T	R	Y	N	G	S	L	E	F	V	G	V	C	G	L	L	K	K	L	Q	H	Q	N	L	L	Y	P	D	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	K	P	N	E	S	G	V	G	H	P	I	L	R	I	S	S	V	R	A	G	H	V	D	Q	N	D	I	R	F	L	E	C	S	E	S	E	L	N	R	H	K	L	Q	D	G	D	L	L	F	T	R	Y	N	G	S	L	E	F	V	G	V	C	G	L	L	K	K	L	Q	H	Q	N	L	L	Y	P	D	K	L
Template Known Secondary structure		S						S		S	S	B	B										S	B	S			S	S	B										T						T	T							S	S		S	S	S	S							B				T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	A	R	L	T	K	D	A	L	P	E	Y	I	E	I	F	F	S	S	P	S	A	R	N	A	M	M	N	C	V	K	T	T	S	G	Q	K	G	I	S	G	K	D	I	K	S	Q	V	V	L	L	P	P	V	K	E	Q	A	E	I	V	R	R	V	E	Q	L	F	A	Y	A	D	T	I	E	K	Q	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	A	R	L	T	K	D	A	L	P	E	Y	I	E	I	F	F	S	S	P	S	A	R	N	A	M	M	N	C	V	K	T	T	S	G	Q	K	G	I	S	G	K	D	I	K	S	Q	V	V	L	L	P	P	V	K	E	Q	A	E	I	V	R	R	V	E	Q	L	F	A	Y	A	D	T	I	E	K	Q	V	N
Template Known Secondary structure								S	S												S											S		S		S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	L	A	R	V	N	N	L	T	Q	S	I	L	A	K	A	F	R	G	E	L	T	A	Q	W	R	A	E	N	P	D	L	I	S	G	E	N	S	A	A	A	L	L	E	K	I	K	A	E	R	A	A	S	G	G	K	K	A	S	R	K	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	L	A	R	V	N	N	L	T	Q	S	I	L	A	K	A	F	R	G	E	L	T	A	Q	W	R	A	E	N	P	D	L	I	S	G	E	N	S	A	A	A	L	L	E	K	I	K	A	E	R	A	A	S	G	G	K	K	A	S	R	K	K	S
Template Known Secondary structure																			T	S					S					S	S	T					S																					T
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.