Job Description P05719 Confidence 100.00% Date Thu Jan 5 10:58:51 GMT 2012 Rank 2 Aligned Residues 403 % Identity 15% Template c1yf2A_ PDB info PDB header:hydrolase regulator Chain: A: PDB Molecule:type i restriction-modification enzyme, s subunit; PDBTitle: three-dimensional structure of dna sequence specificity (s) subunit of2 a type i restriction-modification enzyme and its functional3 implications Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.									.	.
Query SS confidence																																																												.									.	.
Query Sequence		A	G	K	L	P	E	G	W	V	I	A	P	V	S	T	V	T	T	L	I	R	G	V	T	Y	K	K	E	Q	A	I	N	Y	L	K	D	D	Y	L	P	L	I	R	A	N	N	I	Q	N	G	K	F	D	T	T	D	L	V	.	F	V	P	K	N	L	V	K	.	.	E	S	Q	K	I	S	P	E	D	I	V
Query Conservation																																																												.									.	.
Alig confidence																																																												.									.	.
Template Conservation
Template Sequence		I	G	E	I	P	E	D	W	E	I	V	E	L	K	D	V	C	K	K	I	K	A	G	G	T	P	K	T	S	V	E	E	Y	Y	K	N	G	T	I	P	F	V	K	I	E	D	I	T	N	S	N	K	Y	L	T	N	T	K	I	K	I	T	E	E	G	L	N	N	S	N	A	W	I	V	P	K	N	S	V	L
Template Known Secondary structure		S	S	S		B	S	S																					T	T		G	G	G	T	T	T													T	S	S	S						S										T	S	S				B		T	T
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	M	S	S	G	S	K	S	V	V	G	K	S	A	H	Q	H	L	P	F	E	C	S	F	G	A	F	C	G	V	L	R	P	E	K	L	I	F	S	G	F	I	A	H	F	T	K	S	S	L	Y	R	N	K	I	S	S	L	S	A	G	A	N	I	N	N	I	K	P	A	S	F	D	L	I	N	I	P	I
Query Conservation
Alig confidence															.	.	.	.	.																																			.	.
Template Conservation															.	.	.	.	.																																			.	.
Template Sequence		F	A	M	Y	G	S	I	G	E	T	A	I	N	.	.	.	.	.	K	I	E	V	A	T	N	Q	A	I	L	G	I	I	P	K	D	N	I	L	E	S	E	F	L	Y	Y	I	L	A	K	N	K	N	.	.	Y	Y	S	K	L	G	M	Q	T	T	Q	K	N	L	N	A	Q	I	V	K	S	F	K	I	P	L
Template Known Secondary structure					S	S	S	T	T						.	.	.	.	.	S	S		B				S	S								T	T	T													T			.	.						S	S	S	S	S											T
Template Predicted Secondary structure															.	.	.	.	.																																			.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.						.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		P	P	L	A	E	Q	K	I	I	A	E	K	L	D	T	L	L	A	Q	V	D	S	T	K	A	R	F	E	Q	I	P	Q	I	L	K	R	F	R	Q	A	V	L	G	G	A	V	N	G	.	K	L	T	E	K	W	R	N	F	E	P	Q	H	S	V	F	K	K	L	N	F	E	S	I	L	T	E	L	R	N	G
Query Conservation																																																		.
Alig confidence																																																		.
Template Conservation
Template Sequence		P	P	L	E	E	Q	K	Q	I	A	K	I	L	T	K	I	D	E	G	I	E	I	I	E	K	S	I	N	K	L	E	R	I	K	K	G	L	M	H	K	L	L	T	K	G	I	G	H	S	R	F	K	K	S	E	I	G	E	I	P	E	D	W	E	V	F	E	I	K	D	I	F	E	V	K	T	G	T	T	P
Template Known Secondary structure																																															S	S								T	T	S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.					.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure													.										.	.	.	.
Query SS confidence													.										.	.	.	.
Query Sequence		L	S	S	K	P	N	E	S	G	V	G	.	H	P	I	L	R	I	S	S	V	.	.	.	.	R	A	G	H	V	D	Q	N	D	I	R	F	L	E	C	S	E	S	E	L	N	R	H	K	L	Q	D	G	D	L	L	F	T	R	Y	N	G	S	L	E	F	V	G	V	C	G	L	L	K	K	L	Q	H	Q	N
Query Conservation													.										.	.	.	.
Alig confidence													.										.	.	.	.																																					.	.	.	.											.	.
Template Conservation																																																															.	.	.	.											.	.
Template Sequence		S	T	K	K	S	E	Y	W	E	N	G	E	I	N	W	I	T	P	L	D	L	S	R	L	N	E	K	I	Y	I	G	S	S	E	R	K	V	T	K	I	A	L	E	K	C	N	L	N	L	I	P	K	G	S	I	I	I	S	T	R	A	.	.	.	.	P	V	G	Y	V	A	V	L	T	V	.	.	E	S	T
Template Known Secondary structure			T	T		G	G	G	T	T	T													T	T	T	T		S						S	S										T	T				B		T	T							S	S	.	.	.	.	S	T	T						S	S	.	.		B
Template Predicted Secondary structure																																																															.	.	.	.											.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.					.	.	.	310	.	.	.	.	.	.			.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	Y	P	D	K	L	I	R	A	R	L	T	K	D	A	L	P	E	Y	I	E	I	F	F	S	S	P	S	A	R	N	A	M	M	N	C	V	K	T	T	S	G	Q	K	G	I	S	G	K	D	I	K	S	Q	V	V	L	L	P	P	V	K	E	Q	A	E	I	V	R	R	V	E	Q	L	F	A	Y	A	D
Query Conservation
Alig confidence																													.	.	.																																														.	.	.	.
Template Conservation																													.	.	.																																														.	.	.	.
Template Sequence		F	N	Q	G	C	K	G	L	F	Q	K	N	N	D	S	V	N	T	E	F	Y	A	Y	Y	L	K	F	.	.	.	K	K	N	L	L	E	N	L	S	G	G	S	T	F	K	E	L	S	K	S	M	L	E	N	F	K	I	P	L	P	P	L	E	E	Q	K	Q	I	A	K	I	L	S	S	V	.	.	.	.	D
Template Known Secondary structure				T	T							S		T	T	S													.	.	.	T										S	S	S	S																																.	.	.	.
Template Predicted Secondary structure																													.	.	.																																														.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.					.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	E	K	Q	V	N	N	A	L	A	R	V	N	N	L	T	Q	S	I	L	A	K	A	F	R	G	E	L	T	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	S	I	E	L	K	K	Q	K	K	E	K	L	Q	R	M	K	K	K	I	M	E	L	L	L	T	G	K	V	R	V	K
Template Known Secondary structure																										T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.