Job Description P05719 Confidence 100.00% Date Thu Jan 5 10:58:51 GMT 2012 Rank 4 Aligned Residues 359 % Identity 14% Template c1ydxA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:type i restriction enzyme specificity protein mg438; PDBTitle: crystal structure of type-i restriction-modification system s subunit2 from m. genitalium Resolution 2.30 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	W	V	I	A	P	V	S	T	V	T	T	L	I	R	G	V	T	Y	K	K	E	Q	A	I	N	Y	L	K	D	D	Y	L	P	L	I	R	A	N	N	I	Q	N	G	K	F	D	T	T	D	L	V	F	V	P	K	N	L	V	K	E	S	Q	K	I	S	P	E	D	I	V	I	A	M	S	S	G	S	K	S
Query Conservation
Alig confidence																												.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																												.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		N	W	T	K	R	T	I	D	S	L	F	D	L	K	K	G	E	X	L	E	K	E	L	I	T	P	.	.	.	E	G	K	Y	E	Y	F	N	G	G	V	K	N	S	G	R	T	D	K	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	F	K	N	T	I	S	V	I	.	V	G	G	S	C	G
Template Known Secondary structure																						G	G	G			T	.	.	.	T		S					S	S	S	S	S		S				S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	B		S	S						.		B	S	S	T	T
Template Predicted Secondary structure																												.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.															.	60	.	.	.	.	.	.	.		.	.	70	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	G	K	S	A	H	Q	H	L	P	F	E	C	S	F	G	A	F	C	G	V	L	R	P	E	K	L	I	F	S	G	F	I	A	H	F	T	K	S	S	L	Y	R	N	K	I	S	S	L	S	A	G	A	N	I	N	N	I	K	P	A	S	F	D	L	I	N	I	P	I	P	P	L	A	E	Q	K	I	I
Query Conservation
Alig confidence						.	.	.																																		.	.
Template Conservation						.	.	.																																		.	.
Template Sequence		Y	V	R	L	.	.	.	A	D	K	N	F	F	C	G	Q	S	N	C	T	L	N	L	L	D	P	L	E	L	D	L	K	F	A	Y	Y	A	L	K	S	.	.	Q	Q	E	R	I	E	A	L	A	F	G	T	T	I	Q	N	I	R	I	S	D	L	K	E	L	E	I	P	F	T	S	N	K	N	E	Q	H	A
Template Known Secondary structure						.	.	.		S	S		B				T	T							S		T	T	T	S											T	.	.	T						T	T		B		S	S	S		B
Template Predicted Secondary structure						.	.	.																																		.	.
Template SS confidence
		74	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		A	E	K	L	D	T	L	L	A	Q	V	D	S	T	K	A	R	F	E	Q	I	P	Q	I	L	K	R	F	R	Q	A	V	L	G	G	A	V	N	G	K	L	T	E	K	W	R	N	F	E	P	Q	H	S	V	F	K	K	L	N	F	E	S	I	L	T	E	L	R	N	G	L	S	S	K	P	N	E	S	.	.
Query Conservation																																																																																.	.
Alig confidence				.	.	.																																																																										.	.
Template Conservation				.	.	.
Template Sequence		I	A	.	.	.	N	T	L	S	V	F	D	E	R	L	E	N	L	A	S	L	I	E	I	N	R	K	L	R	D	E	Y	A	H	K	L	F	S	L	D	E	A	F	L	S	H	W	K	L	E	A	L	Q	S	Q	X	H	E	I	T	L	G	E	I	F	N	F	K	S	G	K	Y	L	K	S	E	E	R	L	E
Template Known Secondary structure				.	.	.																																	T	T								T	T		T											G	G	G	T											G	G	G		B	S
Template Predicted Secondary structure				.	.	.
Template SS confidence
		149	150				.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	G	H	P	I	L	R	I	S	S	V	R	A	G	H	V	D	Q	N	D	I	R	F	L	E	C	S	E	S	E	L	N	R	H	K	L	Q	D	G	D	L	L	F	T	R	Y	N	G	S	L	E	F	V	G	V	C	G	L	L	K	K	L	Q	H	Q	N	L	L	Y	P	D	K	L	I	R	A	R	L	T
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template Sequence		E	G	K	F	P	Y	Y	G	A	G	I	D	N	T	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	E	P	N	T	E	K	D	T	I	S	I	I	S	N	G	Y	S	L	G	N	I	R	Y	H	.	.	.	.	.	.	E	I	P	W	F	N	G	T	G	S	I	A	L	E	P	X	N
Template Known Secondary structure		S		S					S	S	S	S	S		S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S		S	B		S	S							S	S	T	T	T	T						.	.	.	.	.	.	S	S		B				T	T							S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.																.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.							.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.		.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		K	D	A	L	P	E	Y	I	E	I	F	F	S	S	P	S	A	R	N	A	M	M	N	C	V	K	T	T	S	G	Q	K	G	I	S	G	K	D	I	K	S	Q	V	V	L	L	P	P	.	V	K	E	Q	A	E	I	V	R	R	V	E	Q	L	F	A	Y	A	D	T	I	E	K	Q	V	N	N	A	L	A	R
Query Conservation																																																		.
Alig confidence																.	.											.																						.															.	.	.	.
Template Conservation																.	.											.																																					.	.	.	.
Template Sequence		N	E	I	Y	V	P	F	F	Y	C	A	L	K	Y	.	.	L	Q	K	D	I	K	E	R	X	K	.	S	D	D	S	P	F	L	S	L	K	L	A	G	E	I	K	V	P	Y	V	K	S	F	Q	L	Q	R	K	A	G	K	I	V	F	L	L	.	.	.	.	D	Q	K	L	D	Q	Y	K	K	E	L	S	S
Template Known Secondary structure		T	T													.	.											.			T	S										T							S																.	.	.	.
Template Predicted Secondary structure																.	.											.																																					.	.	.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.					.	.	.	.	.	350	.	.	.	.	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	N	L	T	Q	S	I	L	A	K	A	F	R	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	V	I	R	D	T	L	L	K	K	L	F	P	D	X
Template Known Secondary structure														S
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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