Job Description P0A910 Confidence 96.80% Date Thu Jan 5 11:09:07 GMT 2012 Rank 33 Aligned Residues 153 % Identity 12% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.							.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.									.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.					.
Predicted Secondary structure																						.	.	.	.	.	.																							.	.	.	.	.	.	.	.																				.	.	.	.
Query SS confidence																						.	.	.	.	.	.																							.	.	.	.	.	.	.	.																				.	.	.	.
Query Sequence		D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	Y	H	D	T	G	F	.	.	.	.	.	.	I	N	N	N	G	P	T	H	E	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	.	.	.	.	.	.	.	.	N	P	Y	V	G	F	E	M	G	Y	D	W	L	G	R	M	P	Y	K	.	.	.	.	G
Query Conservation																						.	.	.	.	.	.																							.	.	.	.	.	.	.	.																				.	.	.	.
Alig confidence																						.	.	.	.	.	.																							.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	N	D	W	F	A	E	P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	R	A	S	N	G	L	R	V
Template Known Secondary structure		S	S	S	B																				S	S	S																				B					G	G	G																						S	S	S
Template Predicted Secondary structure
Template SS confidence
		827	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	E	N	G	A	Y	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	I	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	K	S	N	V	Y	G	K	N	H	D	T	G	V	S	P	V	F	A	G	G	V	E	Y	A	I	T	P	E	I	A	T	R	L	E	Y	Q	W	T	N
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.
Template Sequence		K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	S	T	G	R	.	.	.	.	.	.	.	H	G	R	V	E	L	G	A	G	V	D	A	A	L	G	K	G	H	N	L	Y	A	S	Y	E	Y	A	A
Template Known Secondary structure																								T	T	S																					.	.	.	.	.	.	.	B														G	G	G	B
Template Predicted Secondary structure																																															.	.	.	.	.	.	.
Template SS confidence
		907	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.								.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	G	D	A	H	T	I	G	T	R	P	D	N	G	M	L	S	L	G	V	S	Y	R	F
Query Conservation
Alig confidence			.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.
Template Sequence		G	.	.	.	.	.	.	.	D	R	I	N	I	P	W	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure			.	.	.	.	.	.	.	S	S													B
Template Predicted Secondary structure			.	.	.	.	.	.	.
Template SS confidence
		993								.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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