 |
Job Description | P46846 | Confidence | 40.44% | Date | Thu Jan 5 12:04:19 GMT 2012 |
Rank | 144 | Aligned Residues | 81 |
% Identity | 12% | Template | c3updA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:ornithine carbamoyltransferase; |
PDBTitle: 2.9 angstrom crystal structure of ornithine carbamoyltransferase2 (argf) from vibrio vulnificus
|
Resolution | 2.91 Å |
|
 |
  |   |
129 | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | G | F | N | Q | S | D | L | L | C | Q | P | L | S | R | W | L | H | C | Q | W | D | S | E | A | V | T | R | T | R | A | T | A | T | Q | H | F | L | S | A | R | L | R | K | R | N | L | K | N | A | F | R | L | E | L | P | V | Q | G | R | H | M | V | I | V | D | D | V | V | T | T | G | S | T | V | A | E | I | A | Q |
Query Conservation |   |
|
|
|
|
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|   |
|
|
|
|
|   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   | . | . |   |   |   |
|   |   |   |   |
|
|
|
| . |
| . |
|   |   |   |   |   |
|
|
|
|
|
|   |
|
|   |
|
|   |
|   |   |   |   | . | . | . | . | . |
|   |   |   |
|
|   |
|
|   |
|
|
|   | . | . |   |   |   |
|   |   |
|   |   |   |
Template Sequence |   |
R | G | F | G | Q | A | I | V | . |
. |
E | E | L | G | A | F | A | G | V | P | V | W | . |
N | . |
G | L | T | D | E | F | H | P | T | Q | I | L | A | D | F | L | T | M | L | E | H | S | Q | G | . |
. |
. |
. |
. |
K | A | L | A | D | I | Q | F | A | Y | L | G | D | A | . |
. |
R | N | N | V | G | N | S | L | M | V |
Template Known Secondary structure |   |
 | S | S |
|  |  |  |  | . | . |  |  |  |  |  |  | S | S | S |
|  |  | . |  | . |  |  |
| S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | S | S | S | . | . | . | . | . |
|
| G | G | G |
|  |  |  |  |  | S |
|
| . | . | S | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|  |  |  |  | . | . |  |  |  |  |  |  |
|
|
|
|  |  | . |  | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |
|
|
| . | . |
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
108 | . | 110 | . | . | . | . | . | |
|
. | . | . | . | 120 | . | . | . | . | . | . | . | |
. | |
. | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 160 | . | . | . | . | . | . | |
|
. | . | . | 170 | . | . | . | . | . | . |
  |
  |   |
209 | 210 | . | . | . | . | . | . | . | . | . | 220 |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | L | L | R | N | G | A | A | A | V | Q | V |
Query Conservation |   |
  |
|   |   |   |
|
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |   |
|   |   |   |
Template Sequence |   |
G | A | A | K | M | G | M | D | I | R | L | V |
Template Known Secondary structure |   |
 |  |  |  | T | T |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
177 | . | . | 180 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|