Job Description P32151 Confidence 4.78% Date Thu Jan 5 11:49:31 GMT 2012 Rank 61 Aligned Residues 160 % Identity 14% Template c3l8jA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:programmed cell death protein 10; PDBTitle: crystal structure of ccm3, a cerebral cavernous malformation protein2 critical for vascular integrity Resolution 3.05 Å

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		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	N	T	I	N	E	M	D	K	Y	Y	T	Q	E	N	Y	K	D	D	A	F	A	K	G	K	T	L	H	Q	T	F	L	K	N	L	E	A	F	E	P	V	A	E	S	Y	H	A	A	I	Q	E	I	N	D	K	R	Q	L	A	E	L	K	N	I	E	E	R	E	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.																																						.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.																																						.	.
Template Sequence		M	Y	P	V	F	N	E	L	E	R	.	.	.	.	.	.	.	.	.	V	N	L	S	A	A	Q	T	L	R	A	A	F	I	K	A	E	K	E	N	P	G	L	T	Q	D	I	I	M	K	I	L	E	K	K	S	V	.	.	E	V	N	F	T	E	S	L	L	R	M	A	A	D	D	V	E	E	Y	M	I	E
Template Known Secondary structure										T	T	.	.	.	.	.	.	.	.	.	T																			S	T	T												T				.	.												T	T	S			G	G	G
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.																																						.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.										.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.						250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																					.	.	.	.	.																																	.	.	.
Query SS confidence																					.	.	.	.	.																																	.	.	.
Query Sequence		G	K	T	F	H	Y	Y	S	L	A	V	M	I	S	A	K	Q	I	N	.	.	.	.	.	N	L	I	S	Q	D	K	F	D	A	E	A	A	M	K	K	V	S	E	L	E	T	L	V	A	Q	A	K	E	A	D	K	.	.	.	G	G	M	N	F	S	F	I	N	S	A	G	Q	Y	Q	L	E	A	K	K	Y
Query Conservation																					.	.	.	.	.																																	.	.	.
Alig confidence																					.	.	.	.	.																																	.	.	.
Template Conservation
Template Sequence		R	P	E	P	E	F	Q	D	L	N	E	K	A	R	A	L	K	Q	I	L	S	K	I	P	D	E	I	N	D	R	V	R	F	L	Q	T	I	K	D	I	A	S	A	I	K	E	L	L	D	T	V	N	N	V	F	K	K	Y	Q	Y	Q	N	R	R	A	L	E	H	Q	K	K	E	F	V	K	Y	S	K	S	F
Template Known Secondary structure		S		S																			T	G	G	G	T	S	S	S																												S	S				S
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	R	I	R	D	K	V	P	Y	S	D	W	D	K	E	Q	L	Q	D	A	N	S	S	W	M	V	E	D	S	F	P	R	A	L	R	E	Y	N	E	M	V	D	D	Y	N	S	L
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	T	L	K	T	Y	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	K	A	I	N	V	F	V	S	A	N	R	L	I	H	Q	T	N	L	I
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.																			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions